| SweeD: Likelihood-based detection of selective sweeps in thousands of genomes P Pavlidis, D Živković, A Stamatakis, N Alachiotis Molecular Biology and Evolution, 2013 | 354 | 2013 |
| Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data A Stamatakis, N Alachiotis Bioinformatics 26 (12), i132-i139, 2010 | 143 | 2010 |
| OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets N Alachiotis, A Stamatakis, P Pavlidis Bioinformatics 28 (17), 2274-2275, 2012 | 129 | 2012 |
| 3D-Stacked Memory-Side Acceleration: Accelerator and System Design Q Guo, N Alachiotis, B Akin, F Sadi, G Xu, TM Low, L Pileggi, JC Hoe, ... 2nd Workshop on Near Data Processing (WONDP) in conjunction with the 47th …, 2014 | 122* | 2014 |
| A survey of methods and tools to detect recent and strong positive selection P Pavlidis, N Alachiotis Journal of Biological Research-Thessaloniki 24 (1), 7, 2017 | 108 | 2017 |
| Efficient PC-FPGA Communication over Gigabit Ethernet N Alachiotis, SA Berger, A Stamatakis Computer and Information Technology (CIT), 2010 IEEE 10th International …, 2010 | 108 | 2010 |
| RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors N Alachiotis, P Pavlidis Communications Biology 1 (1), 79, 2018 | 92 | 2018 |
| Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ... Molecular Biology and Evolution 34 (10), 2704-2715, 2017 | 66 | 2017 |
| Exploring FPGAs for accelerating the phylogenetic likelihood function N Alachiotis, E Sotiriades, A Dollas, A Stamatakis 2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009 | 60 | 2009 |
| Efficient floating-point logarithm unit for FPGAs N Alachiotis, A Stamatakis 2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010 | 34 | 2010 |
| dReDBox: Materializing a full-stack rack-scale system prototype of a next-generation disaggregated datacenter M Bielski, I Syrigos, K Katrinis, D Syrivelis, A Reale, D Theodoropoulos, ... 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2018 | 31 | 2018 |
| A versatile UDP/IP based PC↔ FPGA communication platform N Alachiotis, SA Berger, A Stamatakis 2012 International Conference on Reconfigurable Computing and FPGAs, 1-6, 2012 | 30 | 2012 |
| A reconfigurable architecture for the phylogenetic likelihood function N Alachiotis, A Stamatakis, E Sotiriades, A Dollas Field Programmable Logic and Applications, 2009. FPL 2009. International …, 2009 | 29 | 2009 |
| A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ... 2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013 | 27 | 2013 |
| FPGA acceleration of the phylogenetic parsimony kernel? N Alachiotis, A Stamatakis 2011 21st International Conference on Field Programmable Logic and …, 2011 | 27 | 2011 |
| Scalable linkage-disequilibrium-based selective sweep detection: a performance guide N Alachiotis, P Pavlidis GigaScience 5 (1), s13742-016-0114-9, 2016 | 25 | 2016 |
| Accelerating phylogeny-aware short DNA read alignment with FPGAs N Alachiotis, SA Berger, A Stamatakis 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom …, 2011 | 21 | 2011 |
| Coupling SIMD and SIMT Architectures to Boost Performance of a Phylogeny-aware Alignment Kernel N Alachiotis, SA Berger, A Stamatakis BMC Bioinformatics, 2012 | 20 | 2012 |
| Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice MN Ndjiondjop, N Alachiotis, P Pavlidis, A Goungoulou, SB Kpeki, D Zhao, ... Theoretical and Applied Genetics 132 (4), 1145-1158, 2018 | 16 | 2018 |
| Population Genomics Insights into the First Wave of COVID-19 M Vasilarou, N Alachiotis, J Garefalaki, A Beloukas, P Pavlidis Life 11 (2), 129, 2021 | 15 | 2021 |
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
