Stephane E Castel
Stephane E Castel
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Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204-213, 2017
RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
SE Castel, RA Martienssen
Nature Reviews Genetics 14 (2), 100, 2013
Tools and best practices for data processing in allelic expression analysis
SE Castel, A Levy-Moonshine, P Mohammadi, E Banks, T Lappalainen
Genome biology 16 (1), 195, 2015
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
Landscape of X chromosome inactivation across human tissues
T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall, R Satija, M Aguirre, ...
Nature 550 (7675), 244-248, 2017
RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II
M Zaratiegui, SE Castel, DV Irvine, A Kloc, J Ren, F Li, E De Castro, ...
Nature 479 (7371), 135-138, 2011
Structural basis of the oxidative activation of the carboxysomal γ-carbonic anhydrase, CcmM
KL Peńa, SE Castel, C De Araujo, GS Espie, MS Kimber
Proceedings of the National Academy of Sciences 107 (6), 2455-2460, 2010
Dicer promotes transcription termination at sites of replication stress to maintain genome stability
SE Castel, J Ren, S Bhattacharjee, AY Chang, M Sánchez, A Valbuena, ...
Cell 159 (3), 572-583, 2014
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk
SE Castel, A Cervera, P Mohammadi, F Aguet, F Reverter, A Wolman, ...
Nature genetics 50 (9), 1327-1334, 2018
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
S Kim-Hellmuth, M Bechheim, B Pütz, P Mohammadi, Y Nédélec, ...
Nature communications 8 (1), 266, 2017
Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change
P Mohammadi, SE Castel, AA Brown, T Lappalainen
Genome research 27 (11), 1872-1884, 2017
Rare variant phasing and haplotypic expression from RNA sequencing with phASER
SE Castel, P Mohammadi, WK Chung, Y Shen, T Lappalainen
Nature communications 7 (1), 1-6, 2016
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
Oncogenic transformation of Drosophila somatic cells induces a functional piRNA pathway
D Fagegaltier, I Falciatori, B Czech, S Castel, N Perrimon, A Simcox, ...
Genes & development 30 (14), 1623-1635, 2016
Genetic effects on gene expression across human tissues
F Aguet, AA Brown, SE Castel, JR Davis, Y He, B Jo, P Mohammadi, ...
Nature 550 (7675), 204-+, 2017
The GTEx Consortium atlas of genetic regulatory effects across human tissues
F Aguet, AN Barbeira, R Bonazzola, A Brown, SE Castel, B Jo, S Kasela, ...
BioRxiv, 787903, 2019
The conserved RNA binding cyclophilin, Rct1, regulates small RNA biogenesis and splicing independent of heterochromatin assembly
AY Chang, SE Castel, E Ernst, HS Kim, RA Martienssen
Cell reports 19 (12), 2477-2489, 2017
Genetic regulatory variation in populations informs transcriptome analysis in rare disease
P Mohammadi, SE Castel, BB Cummings, J Einson, C Sousa, P Hoffman, ...
Science 366 (6463), 351-356, 2019
Cell type specific genetic regulation of gene expression across human tissues
S Kim-Hellmuth, F Aguet, M Oliva, M Muńoz-Aguirre, V Wucher, S Kasela, ...
bioRxiv, 806117, 2019
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