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Massimiliano Rossi
Massimiliano Rossi
Illumina
Bestätigte E-Mail-Adresse bei illumina.com - Startseite
Titel
Zitiert von
Zitiert von
Jahr
MONI: a pangenomic index for finding maximal exact matches
M Rossi, M Oliva, B Langmead, T Gagie, C Boucher
Journal of Computational Biology 29 (2), 169-187, 2022
69*2022
Computing the original eBWT faster, simpler, and with less memory
C Boucher, D Cenzato, Z Lipták, M Rossi, M Sciortino
International Symposium on String Processing and Information Retrieval 12944 …, 2021
262021
Pan-genomic matching statistics for targeted nanopore sequencing
O Ahmed, M Rossi, S Kovaka, MC Schatz, T Gagie, C Boucher, ...
Iscience 24 (6), 2021
232021
PFP Compressed Suffix Trees∗
C Boucher, O Cvacho, T Gagie, J Holub, G Manzini, G Navarro, M Rossi
2021 Proceedings of the Workshop on Algorithm Engineering and Experiments …, 2021
232021
PHONI: Streamed matching statistics with multi-genome references
C Boucher, T Gagie, I Tomohiro, D Köppl, B Langmead, G Manzini, ...
2021 Data Compression Conference (DCC), 193-202, 2021
202021
SPUMONI 2: improved classification using a pangenome index of minimizer digests
OY Ahmed, M Rossi, T Gagie, C Boucher, B Langmead
Genome Biology 24 (1), 122, 2023
152023
RLBWT tricks
NK Brown, T Gagie, M Rossi
arXiv preprint arXiv:2112.04271, 2021
132021
r-indexing the eBWT
C Boucher, D Cenzato, Z Lipták, M Rossi, M Sciortino
International Symposium on String Processing and Information Retrieval, 3-12, 2021
132021
Tailoring r-index for Document Listing Towards Metagenomics Applications
D Cobas, V Mäkinen, M Rossi
International Symposium on String Processing and Information Retrieval, 291-306, 2020
102020
Bubble-flip—a new generation algorithm for prefix normal words
F Cicalese, Z Lipták, M Rossi
Theoretical Computer Science 743, 38-52, 2018
102018
LZ77 via prefix-free parsing
A Hong, M Rossi, C Boucher
2023 Proceedings of the Symposium on Algorithm Engineering and Experiments …, 2023
92023
Finding maximal exact matches using the r-index
M Rossi, M Oliva, P Bonizzoni, B Langmead, T Gagie, C Boucher
Journal of Computational Biology 29 (2), 188-194, 2022
92022
Greedy additive approximation algorithms for minimum-entropy coupling problem
M Rossi
2019 IEEE International Symposium on Information Theory (ISIT), 1127-1131, 2019
92019
On infinite prefix normal words
F Cicalese, Z Lipták, M Rossi
SOFSEM 2019: Theory and Practice of Computer Science: 45th International …, 2019
92019
Efficiently Merging r-indexes
M Oliva, M Rossi, J Sirén, G Manzini, T Kahveci, T Gagie, C Boucher
2021 Data Compression Conference (DCC), 203-212, 2021
62021
On Lempel-Ziv decompression in small space
SJ Puglisi, M Rossi
2019 Data Compression Conference (DCC), 221-230, 2019
62019
Efficient taxa identification using a pangenome index
O Ahmed, M Rossi, C Boucher, B Langmead
Genome Research 33 (7), 1069-1077, 2023
52023
Identification of allele-specific KIV-2 repeats and impact on Lp (a) measurements for cardiovascular disease risk
S Behera, JR Belyeu, X Chen, LF Paulin, NQH Nguyen, E Newman, ...
bioRxiv, 2023
52023
Spumoni 2: Improved pangenome classification using a compressed index of minimizer digests
O Ahmed, M Rossi, T Gagie, C Boucher, B Langmead
bioRxiv, 2022.09. 08.506805, 2022
52022
Computing maximal unique matches with the r-index
S Giuliani, G Romana, M Rossi
arXiv preprint arXiv:2205.01576, 2022
52022
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