Sean L. Seymour, Ph.D.
Sean L. Seymour, Ph.D.
Seymour Data Science, LLC
Verified email at seymourdatascience.com - Homepage
Title
Cited by
Cited by
Year
A cross-platform toolkit for mass spectrometry and proteomics
MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ...
Nature biotechnology 30 (10), 918-920, 2012
13112012
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
IV Shilov, SL Seymour, AA Patel, A Loboda, WH Tang, SP Keating, ...
Molecular & Cellular Proteomics 6 (9), 1638-1655, 2007
11332007
The minimum information about a proteomics experiment (MIAPE)
CF Taylor, NW Paton, KS Lilley, PA Binz, RK Julian, AR Jones, W Zhu, ...
Nature biotechnology 25 (8), 887-893, 2007
6882007
Nonlinear fitting method for determining local false discovery rates from decoy database searches
WH Tang, IV Shilov, SL Seymour
Journal of proteome research 7 (9), 3661-3667, 2008
2902008
A systems view of epithelial–mesenchymal transition signaling states
S Thomson, F Petti, I Sujka-Kwok, P Mercado, J Bean, M Monaghan, ...
Clinical & experimental metastasis 28 (2), 137-155, 2011
2392011
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), 2012
1802012
A two‐step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
P Jagtap, J Goslinga, JA Kooren, T McGowan, MS Wroblewski, ...
Proteomics 13 (8), 1352-1357, 2013
1352013
The PSI-MOD community standard for representation of protein modification data
L Montecchi-Palazzi, R Beavis, PA Binz, RJ Chalkley, J Cottrell, D Creasy, ...
Nature biotechnology 26 (8), 864-866, 2008
1252008
Guidelines for reporting the use of mass spectrometry in proteomics
CF Taylor, PA Binz, R Aebersold, M Affolter, R Barkovich, EW Deutsch, ...
Nature biotechnology 26 (8), 860-861, 2008
922008
Deep metaproteomic analysis of human salivary supernatant
P Jagtap, T McGowan, S Bandhakavi, ZJ Tu, S Seymour, TJ Griffin, ...
Proteomics 12 (7), 992-1001, 2012
862012
Guidelines for reporting the use of mass spectrometry informatics in proteomics
PA Binz, R Barkovich, RC Beavis, D Creasy, DM Horn, RK Julian Jr, ...
Nature biotechnology 26 (8), 862-863, 2008
702008
Discovering known and unanticipated protein modifications using MS/MS database searching
WH Tang, BR Halpern, IV Shilov, SL Seymour, SP Keating, A Loboda, ...
Analytical Chemistry 77 (13), 3931-3946, 2005
672005
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)
CR Kinsinger, J Apffel, M Baker, X Bian, CH Borchers, R Bradshaw, ...
Journal of proteome research 11 (2), 1412-1419, 2012
532012
Comparison of rates and kinetic isotope effects using PEG-modified variants and glycoforms of glucose oxidase: the relationship of modification of the protein envelope to C− H …
SL Seymour, JP Klinman
Biochemistry 41 (27), 8747-8758, 2002
512002
CysTRAQ—a combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes
V Tambor, CL Hunter, SL Seymour, M Kacerovsky, J Stulik, J Lenco
Journal of proteomics 75 (3), 857-867, 2012
462012
Proteomics and Beyond A report on the 3rd Annual Spring Workshop of the HUPO‐PSI 21–23 April 2006, San Francisco, CA, USA
S Orchard, R Apweiler, R Barkovich, D Field, JS Garavelli, D Horn, ...
Proteomics 6 (16), 4439-4443, 2006
202006
Methods and Systems for Protein and Peptide Evidence Assembly
SL Seymour, A Loboda, W Tang
US Patent App. 11/964,622, 2009
192009
A standardized framing for reporting protein identifications in mzIdentML 1.2
SL Seymour, T Farrah, PA Binz, RJ Chalkley, JS Cottrell, BC Searle, ...
Proteomics 14 (21-22), 2389-2399, 2014
162014
Workflow for analysis of high mass accuracy salivary data set using M ax Q uant and P rotein P ilot search algorithm
P Jagtap, S Bandhakavi, LA Higgins, T McGowan, R Sa, MD Stone, ...
Proteomics 12 (11), 1726-1730, 2012
162012
Bioinformatic Evaluation of Datasets Derived from the ABRF sPRG Proteomics Standard
WS Lane, AI Nesvizhskii, B Searle, DL Tabb, JA Kowalak, SL Seymour
ABRF, 2007
82007
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Articles 1–20