Vincent Daubin

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	All	Since 2016
Citations	6994	2678
h-index	38	30
i10-index	52	47

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Co-authors

Eric TannierINRIA, Université de Lyon 1Verified email at inria.fr
Gergely J, SzöllősiEötvös University, ELTEVerified email at elte.hu
Bastien BoussauLBBE, UMR 5558, CNRS researcher, Université de LyonVerified email at univ-lyon1.fr
Manolo GouyLaboratory of Biometry and Evolutionary Biology, CNRS, LyonVerified email at univ-lyon1.fr
Howard OchmanDepartment of Integrative Biology, University of Texas at AustinVerified email at austin.utexas.edu
Florent LassallePost-Doctoral Research Associate, Imperial College LondonVerified email at imperial.ac.uk
Nancy A. MoranProfessor of Integrative Biology, University of Texas at AustinVerified email at austin.utexas.edu
Laurent DuretCNRS, université Lyon 1Verified email at univ-lyon1.fr
Daniel MullerMCF université de LyonVerified email at univ-lyon1.fr
Sophie AbbyCNRS researcher, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Gabriel MaraisCNRS / Univ. Lyon 1Verified email at univ-lyon1.fr
Celine ScornavaccaInstitut des Sciences de l'Evolution, MontpellierVerified email at umontpellier.fr
Nicolas GaltierCNRS - Université Montpellier 2Verified email at univ-montp2.fr
Mathieu GroussinPost-doc, MITVerified email at mit.edu
Jean-François DufayardChercheur en génomique comparative et phylogénie, CIRAD, MontpellierVerified email at cirad.fr
Vincent BerryLIRMM, Université Montpellier - CNRSVerified email at lirmm.fr
Vincent Ranwez Professor at Montpellier SupAgroVerified email at supagro.inra.fr
Thomas BataillonAssociate Professor, Bioinformatics Research Center, Aarhus UniversityVerified email at birc.au.dk
Claudine MEDIGUECEA/IG/Genoscope & CNRS UMR8030Verified email at genoscope.cns.fr
Lars ArvestadStockholm University; Dept of Mathematics; Swedish e-Science Research Center, and SciLifeLabVerified email at math.su.se

Vincent Daubin

cnrs

Verified email at univ-lyon1.fr

Evolutionary genomics


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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia JM Aury, O Jaillon, L Duret, B Noel, C Jubin, BM Porcel, B Ségurens, ... Nature 444 (7116), 171-178, 2006	766	2006
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria E Lerat, V Daubin, NA Moran PLoS biology 1 (1), e19, 2003	491	2003
Evolutionary origins of genomic repertoires in bacteria E Lerat, V Daubin, H Ochman, NA Moran PLoS Biol 3 (5), e130, 2005	375	2005
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ... Genome research 17 (1), 7-15, 2007	367	2007
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history V Daubin, M Gouy, G Perriere Genome research 12 (7), 1080-1090, 2002	354	2002
Phylogenetics and the cohesion of bacterial genomes V Daubin, NA Moran, H Ochman Science 301 (5634), 829-832, 2003	311	2003
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli V Daubin, H Ochman Genome research 14 (6), 1036-1042, 2004	288	2004
Examining bacterial species under the specter of gene transfer and exchange H Ochman, E Lerat, V Daubin Proceedings of the National Academy of Sciences 102 (suppl 1), 6595-6599, 2005	233	2005
Genome-scale coestimation of species and gene trees B Boussau, GJ Szöllősi, L Duret, M Gouy, E Tannier, V Daubin Genome research 23 (2), 323-330, 2013	228	2013
The source of laterally transferred genes in bacterial genomes V Daubin, E Lerat, G Perrière Genome biology 4 (9), 1-12, 2003	210	2003
Dealing with incongruence in phylogenomic analyses N Galtier, V Daubin Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008	195	2008
The inference of gene trees with species trees GJ Szöllősi, E Tannier, V Daubin, B Boussau Systematic biology 64 (1), e42-e62, 2015	190	2015
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? S Gribaldo, AM Poole, V Daubin, P Forterre, C Brochier-Armanet Nature Reviews Microbiology 8 (10), 743-752, 2010	171	2010
Databases of homologous gene families for comparative genomics S Penel, AM Arigon, JF Dufayard, AS Sertier, V Daubin, L Duret, M Gouy, ... BMC bioinformatics 10 (6), 1-13, 2009	170	2009
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin Proceedings of the national academy of sciences 109 (43), 17513-17518, 2012	158	2012
Models, algorithms and programs for phylogeny reconciliation JP Doyon, V Ranwez, V Daubin, V Berry Briefings in bioinformatics 12 (5), 392-400, 2011	158	2011
GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands F Lassalle, S Périan, T Bataillon, X Nesme, L Duret, V Daubin PLoS Genet 11 (2), e1004941, 2015	151	2015
Bacterial molecular phylogeny using supertree approach V Daubin, M Gouy Genome Informatics 12, 155-164, 2001	124	2001
Lateral gene transfer as a support for the tree of life SS Abby, E Tannier, M Gouy, V Daubin Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012	122	2012
G+ C3 structuring along the genome: a common feature in prokaryotes V Daubin, G Perriere Molecular biology and evolution 20 (4), 471-483, 2003	113	2003

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