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Haowen Zhang
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Year
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
H Cheng, GT Concepcion, X Feng, H Zhang, H Li
Nature Methods 18 (2), 170-175, 2021
5512021
Weighted minimizer sampling improves long read mapping
C Jain, A Rhie, H Zhang, C Chu, S Koren, A Phillippy
Bioinformatics, i111–i118, 2020
942020
A comprehensive evaluation of long read error correction methods
H Zhang, C Jain, S Aluru
BMC Genomics 21 (6), 1-15, 2020
752020
On the Complexity of Sequence-to-Graph Alignment
C Jain*, H Zhang*, Y Gao, S Aluru
Journal of Computational Biology, 2020
432020
Accelerating sequence alignment to graphs
C Jain, S Misra, H Zhang, A Dilthey, S Aluru
2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2019
342019
Real-time mapping of nanopore raw signals
H Zhang, H Li, C Jain, H Cheng, KF Au, H Li, S Aluru
Bioinformatics 37 (Supplement_1), i477-i483, 2021
202021
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
P Brown, R Consortium, Y Zhou
Database 2019, 2019
172019
Fast and efficient short read mapping based on a succinct hash index
H Zhang*, Y Chan*, K Fan, B Schmidt, W Liu
BMC bioinformatics 19 (1), 92, 2018
142018
Fast alignment and preprocessing of chromatin profiles with Chromap
H Zhang, L Song, X Wang, H Cheng, C Wang, CA Meyer, T Liu, M Tang, ...
Nature communications 12 (1), 1-6, 2021
102021
Validating paired-end read alignments in sequence graphs
C Jain, H Zhang, A Dilthey, S Aluru
19th International Workshop on Algorithms in Bioinformatics (WABI 2019) 143 …, 2019
52019
Fast sequence to graph alignment using the graph wavefront algorithm
H Zhang, S Wu, S Aluru, H Li
arXiv preprint arXiv:2206.13574, 2022
12022
Association of human leukocyte antigen alleles and supertypes with immunogenicity of oral rotavirus vaccine given to infants in China
Y Liu, T Guo, Q Yu, H Zhang, J Du, Y Zhang, S Xia, H Yang, Q Li
Medicine 97 (40), 2018
12018
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