Jeffrey P. Spence
Cited by
Cited by
The Simons genome diversity project: 300 genomes from 142 diverse populations
S Mallick, H Li, M Lipson, I Mathieson, M Gymrek, F Racimo, M Zhao, ...
Nature 538 (7624), 201-206, 2016
Early human dispersals within the Americas
JV Moreno-Mayar, L Vinner, P de Barros Damgaard, C De La Fuente, ...
Science 362 (6419), eaav2621, 2018
Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations
JP Spence, YS Song
Science Advances 5 (10), eaaw9206, 2019
A likelihood-free inference framework for population genetic data using exchangeable neural networks
J Chan, V Perrone, J Spence, P Jenkins, S Mathieson, Y Song
Advances in neural information processing systems 31, 2018
Genetic diversity loss in the Anthropocene
M Exposito-Alonso, TR Booker, L Czech, L Gillespie, S Hateley, ...
Science 377 (6613), 1431-1435, 2022
Systematic differences in discovery of genetic effects on gene expression and complex traits
H Mostafavi, JP Spence, S Naqvi, JK Pritchard
Nature Genetics 55 (11), 1866-1875, 2023
Inference of complex population histories using whole-genome sequences from multiple populations
M Steinrücken, J Kamm, JP Spence, YS Song
Proceedings of the National Academy of Sciences 116 (34), 17115-17120, 2019
Model‐based detection and analysis of introgressed Neanderthal ancestry in modern humans
M Steinrücken, JP Spence, JA Kamm, E Wieczorek, YS Song
Molecular ecology 27 (19), 3873-3888, 2018
Shared heritability of human face and brain shape
S Naqvi, Y Sleyp, H Hoskens, K Indencleef, JP Spence, R Bruffaerts, ...
Nature genetics 53 (6), 830-839, 2021
Inference of population history using coalescent HMMs: review and outlook
JP Spence, M Steinrücken, J Terhorst, YS Song
Current opinion in genetics & development 53, 70-76, 2018
Two-locus likelihoods under variable population size and fine-scale recombination rate estimation
JA Kamm, JP Spence, J Chan, YS Song
Genetics 203 (3), 1381-1399, 2016
Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits
RA Patel, SA Musharoff, JP Spence, H Pimentel, C Tcheandjieu, ...
The American Journal of Human Genetics 109 (7), 1286-1297, 2022
The site frequency spectrum for general coalescents
JP Spence, JA Kamm, YS Song
Genetics 202 (4), 1549-1561, 2016
Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation
S Fan, JP Spence, Y Feng, MEB Hansen, J Terhorst, MH Beltrame, ...
Cell 186 (5), 923-939. e14, 2023
A flexible modeling and inference framework for estimating variant effect sizes from GWAS summary statistics
JP Spence, N Sinnott-Armstrong, TL Assimes, JK Pritchard
BioRxiv, 2022.04. 18.488696, 2022
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ...
Elife 12, RP84874, 2023
Stable population structure in Europe since the Iron Age, despite high mobility
ML Antonio, CL Weiß, Z Gao, S Sawyer, V Oberreiter, HM Moots, ...
Elife 13, e79714, 2024
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
J Schreiber, C Boix, J wook Lee, H Li, Y Guan, CC Chang, JC Chang, ...
Genome biology 24 (1), 79, 2023
A comprehensive rRNA variation atlas in health and disease.
D Rothschild, TT Susanto, JP Spence, NR Genuth, N Sinnott-Armstrong, ...
Biorxiv: the Preprint Server for Biology, 2023
Monitoring rapid evolution of plant populations at scale with Pool-Sequencing
L Czech, Y Peng, JP Spence, PLM Lang, T Bellagio, J Hildebrandt, ...
BioRxiv, 2022.02. 02.477408, 2022
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