| Architecture of the human interactome defines protein communities and disease networks EL Huttlin, RJ Bruckner, JA Paulo, JR Cannon, L Ting, K Baltier, G Colby, ... Nature 545 (7655), 505-509, 2017 | 707 | 2017 |
| Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells AN Kettenbach, DK Schweppe, BK Faherty, D Pechenick, AA Pletnev, ... Science signaling 4 (179), rs5-rs5, 2011 | 408 | 2011 |
| Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry DK Schweppe, JD Chavez, CF Lee, A Caudal, SE Kruse, R Stuppard, ... Proceedings of the National Academy of Sciences 114 (7), 1732-1737, 2017 | 110 | 2017 |
| Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors DK Schweppe, JR Rigas, SA Gerber Journal of proteomics 91, 286-296, 2013 | 78 | 2013 |
| Quantitative proteomics of the cancer cell line encyclopedia DP Nusinow, J Szpyt, M Ghandi, CM Rose, ER McDonald III, M Kalocsay, ... Cell 180 (2), 387-402. e16, 2020 | 75 | 2020 |
| Host-microbe protein interactions during bacterial infection DK Schweppe, C Harding, JD Chavez, X Wu, E Ramage, PK Singh, ... Chemistry & biology 22 (11), 1521-1530, 2015 | 71 | 2015 |
| Quantitative interactome analysis reveals a chemoresistant edgotype JD Chavez, DK Schweppe, JK Eng, C Zheng, A Taipale, Y Zhang, ... Nature communications 6 (1), 1-12, 2015 | 62 | 2015 |
| In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075 X Wu, JD Chavez, DK Schweppe, C Zheng, CR Weisbrod, JK Eng, ... Nature communications 7 (1), 1-14, 2016 | 58 | 2016 |
| In vivo conformational dynamics of Hsp90 and its interactors JD Chavez, DK Schweppe, JK Eng, JE Bruce Cell chemical biology 23 (6), 716-726, 2016 | 48 | 2016 |
| TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples J Li, JG Van Vranken, LP Vaites, DK Schweppe, EL Huttlin, C Etienne, ... Nature methods 17 (4), 399-404, 2020 | 45 | 2020 |
| Characterization and optimization of multiplexed quantitative analyses using high-field asymmetric-waveform ion mobility mass spectrometry DK Schweppe, S Prasad, MW Belford, J Navarrete-Perea, DJ Bailey, ... Analytical chemistry 91 (6), 4010-4016, 2019 | 45 | 2019 |
| A quantitative tissue-specific landscape of protein redox regulation during aging H Xiao, MP Jedrychowski, DK Schweppe, EL Huttlin, Q Yu, DE Heppner, ... Cell 180 (5), 968-983. e24, 2020 | 42 | 2020 |
| Active instrument engagement combined with a real-time database search for improved performance of sample multiplexing workflows BK Erickson, J Mintseris, DK Schweppe, J Navarrete-Perea, AR Erickson, ... Journal of proteome research 18 (3), 1299-1306, 2019 | 38 | 2019 |
| Dual proteome-scale networks reveal cell-specific remodeling of the human interactome EL Huttlin, RJ Bruckner, J Navarrete-Perea, JR Cannon, K Baltier, ... bioRxiv, 2020 | 31 | 2020 |
| A nondesensitizing kainate receptor point mutant N Nayeem, Y Zhang, DK Schweppe, DR Madden, T Green Molecular pharmacology 76 (3), 534-542, 2009 | 31 | 2009 |
| A general method for targeted quantitative cross-linking mass spectrometry JD Chavez, JK Eng, DK Schweppe, M Cilia, K Rivera, X Zhong, X Wu, ... PloS one 11 (12), e0167547, 2016 | 30 | 2016 |
| Full-featured, real-time database searching platform enables fast and accurate multiplexed quantitative proteomics DK Schweppe, JK Eng, Q Yu, D Bailey, R Rad, J Navarrete-Perea, ... Journal of proteome research 19 (5), 2026-2034, 2020 | 29 | 2020 |
| XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data DK Schweppe, C Zheng, JD Chavez, AT Navare, X Wu, JK Eng, JE Bruce Bioinformatics 32 (17), 2716-2718, 2016 | 29 | 2016 |
| BioPlex display: an interactive suite for large-scale AP–MS protein–protein interaction data DK Schweppe, EL Huttlin, JW Harper, SP Gygi Journal of proteome research 17 (1), 722-726, 2018 | 26 | 2018 |
| Large-scale and targeted quantitative cross-linking MS using isotope-labeled protein interaction reporter (PIR) cross-linkers X Zhong, AT Navare, JD Chavez, JK Eng, DK Schweppe, JE Bruce Journal of proteome research 16 (2), 720-727, 2017 | 25 | 2017 |
James E. BruceProfessorVerified email at uw.edu
