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Katelyn McNair
Katelyn McNair
Research Associate, San Diego State University
Verified email at mail.sdsu.edu
Title
Cited by
Cited by
Year
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
Nature communications 5 (1), 4498, 2014
7802014
Lytic to temperate switching of viral communities
B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ...
Nature 531 (7595), 466-470, 2016
5032016
Computational approaches to predict bacteriophage–host relationships
RA Edwards, K McNair, K Faust, J Raes, BE Dutilh
FEMS microbiology reviews 40 (2), 258-272, 2016
4102016
PHACTS, a computational approach to classifying the lifestyle of phages
K McNair, BA Bailey, RA Edwards
Bioinformatics 28 (5), 614-618, 2012
2322012
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ...
Nature microbiology 4 (10), 1727-1736, 2019
2092019
PHANOTATE: a novel approach to gene identification in phage genomes
K McNair, C Zhou, EA Dinsdale, B Souza, RA Edwards
Bioinformatics 35 (22), 4537-4542, 2019
1672019
Phage genome annotation using the RAST pipeline
K McNair, RK Aziz, GD Pusch, R Overbeek, BE Dutilh, R Edwards
Bacteriophages: Methods and Protocols, Volume 3, 231-238, 2018
782018
Multivariate analysis of functional metagenomes
EA Dinsdale, RA Edwards, I Tuba, K McNair, M Creek, V Ponomarenko
Frontiers in genetics 4, 44750, 2013
732013
Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome
L Boling, DA Cuevas, JA Grasis, HS Kang, B Knowles, K Levi, H Maughan, ...
Gut Microbes 11 (4), 721-734, 2020
702020
A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage
S Benler, AG Cobián-Güemes, K McNair, SH Hung, K Levi, R Edwards, ...
Microbiome 6, 1-10, 2018
572018
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
CL Ecale Zhou, S Malfatti, J Kimbrel, C Philipson, K McNair, T Hamilton, ...
Bioinformatics 35 (21), 4402-4404, 2019
522019
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun 5: 4498
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
422014
Prophage genomics reveals patterns in phage genome organization and replication
HS Kang, K McNair, DA Cuevas, BA Bailey, AM Segall, RA Edwards
BioRxiv, 114819, 2017
382017
PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive
PJ Torres, RA Edwards, KA McNair
Bioinformatics 33 (15), 2389-2391, 2017
292017
Draft genome sequence of the fish pathogen Piscirickettsia salmonis
M Eppinger, K McNair, X Zogaj, EA Dinsdale, RA Edwards, KE Klose
Genome announcements 1 (6), 10.1128/genomea. 00926-13, 2013
202013
Philympics 2021: prophage predictions perplex programs
MJ Roach, K McNair, SK Giles, L Inglis, E Pargin, S Roux, P Decewicz, ...
bioRxiv, 2021.06. 03.446868, 2021
162021
MultiPhATE2: code for functional annotation and comparison of phage genomes
CL Ecale Zhou, J Kimbrel, R Edwards, K McNair, BA Souza, S Malfatti
G3 11 (5), jkab074, 2021
162021
GenomePeek—an online tool for prokaryotic genome and metagenome analysis
K McNair, RA Edwards
PeerJ 3, e1025, 2015
162015
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun. 2014; 5: 4498
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
14
Predicting the capsid architecture of phages from metagenomic data
DY Lee, C Bartels, K McNair, RA Edwards, MA Swairjo, A Luque
Computational and structural biotechnology journal 20, 721-732, 2022
122022
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Articles 1–20