| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 12282 | 2019 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2039 | 2017 |
| Longitudinal analysis of microbial interaction between humans and the indoor environment S Lax, DP Smith, J Hampton-Marcell, SM Owens, KM Handley, NM Scott, ... Science 345 (6200), 1048-1052, 2014 | 902 | 2014 |
| Meta-analysis of gut microbiome studies identifies disease-specific and shared responses C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm Nature communications 8 (1), 1784, 2017 | 816 | 2017 |
| Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism V Leone, SM Gibbons, K Martinez, AL Hutchison, EY Huang, CM Cham, ... Cell host & microbe 17 (5), 681-689, 2015 | 713 | 2015 |
| Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014 | 585 | 2014 |
| Health and disease markers correlate with gut microbiome composition across thousands of people O Manor, CL Dai, SA Kornilov, B Smith, ND Price, JC Lovejoy, ... Nature communications 11 (1), 5206, 2020 | 400 | 2020 |
| Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of … P Vitaglione, I Mennella, R Ferracane, AA Rivellese, R Giacco, D Ercolini, ... The American journal of clinical nutrition 101 (2), 251-261, 2015 | 323 | 2015 |
| Adaptive evolution within gut microbiomes of healthy people S Zhao, TD Lieberman, M Poyet, KM Kauffman, SM Gibbons, M Groussin, ... Cell host & microbe 25 (5), 656-667. e8, 2019 | 299 | 2019 |
| Gut microbiome pattern reflects healthy ageing and predicts survival in humans T Wilmanski, C Diener, N Rappaport, S Patwardhan, J Wiedrick, ... Nature metabolism 3 (2), 274-286, 2021 | 293 | 2021 |
| A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research M Poyet, M Groussin, SM Gibbons, J Avila-Pacheco, X Jiang, SM Kearney, ... Nature medicine 25 (9), 1442-1452, 2019 | 247 | 2019 |
| Severe plant invasions can increase mycorrhizal fungal abundance and diversity Y Lekberg, SM Gibbons, S Rosendahl, PW Ramsey The ISME journal 7 (7), 1424-1433, 2013 | 242 | 2013 |
| Evidence for a persistent microbial seed bank throughout the global ocean SM Gibbons, JG Caporaso, M Pirrung, D Field, R Knight, JA Gilbert Proceedings of the National Academy of Sciences 110 (12), 4651-4655, 2013 | 230 | 2013 |
| Spatial scale drives patterns in soil bacterial diversity SL O'Brien, SM Gibbons, SM Owens, J Hampton‐Marcell, ER Johnston, ... Environmental microbiology 18 (6), 2039-2051, 2016 | 225 | 2016 |
| Blood metabolome predicts gut microbiome α-diversity in humans T Wilmanski, N Rappaport, JC Earls, AT Magis, O Manor, J Lovejoy, ... Nature biotechnology 37 (10), 1217-1228, 2019 | 217 | 2019 |
| 454‐sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities Y Lekberg, T Schnoor, R Kjøller, SM Gibbons, LH Hansen, WA Al‐Soud, ... Journal of Ecology, 2011 | 198 | 2011 |
| Characterization of the salivary microbiome in patients with pancreatic cancer PJ Torres, EM Fletcher, SM Gibbons, M Bouvet, KS Doran, ST Kelley PeerJ 3, e1373, 2015 | 185 | 2015 |
| Forensic analysis of the microbiome of phones and shoes S Lax, JT Hampton-Marcell, SM Gibbons, GB Colares, D Smith, JA Eisen, ... Microbiome 3 (1), 1-8, 2015 | 177 | 2015 |
| Use and abuse of correlation analyses in microbial ecology A Carr, C Diener, NS Baliga, SM Gibbons The ISME journal 13 (11), 2647-2655, 2019 | 169 | 2019 |
| Elevated rates of horizontal gene transfer in the industrialized human microbiome M Groussin, M Poyet, A Sistiaga, SM Kearney, K Moniz, M Noel, J Hooker, ... Cell 184 (8), 2053-2067. e18, 2021 | 159 | 2021 |
Jack A GilbertUniversity of California, San DiegoVerified email at ucsd.edu
