Andrew Jones
Andrew Jones
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination
JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Rios, ...
Nature biotechnology 32 (3), 223-226, 2014
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations
FF Gonzalez-Galarza, S Christmas, D Middleton, AR Jones
Nucleic acids research 39 (suppl_1), D913-D919, 2010
The minimum information about a proteomics experiment (MIAPE)
CF Taylor, NW Paton, KS Lilley, PA Binz, RK Julian, AR Jones, W Zhu, ...
Nature biotechnology 25 (8), 887-893, 2007
Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations
FF González-Galarza, LYC Takeshita, EJM Santos, F Kempson, ...
Nucleic acids research 43 (D1), D784-D788, 2015
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), 2012
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
D Xia, SJ Sanderson, AR Jones, JH Prieto, JR Yates, E Bromley, ...
Genome biology 9 (7), 1-18, 2008
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
AR Jones, M Miller, R Aebersold, R Apweiler, CA Ball, A Brazma, ...
Nature biotechnology 25 (10), 1127-1133, 2007
Modulation of the host cell proteome by the intracellular apicomplexan parasite Toxoplasma gondii
MM Nelson, AR Jones, JC Carmen, AP Sinai, R Burchmore, JM Wastling
Infection and immunity 76 (2), 828-844, 2008
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience
J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ...
Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014
Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
AR Jones, JA Siepen, SJ Hubbard, NW Paton
Proteomics 9 (5), 1220-1229, 2009
Allele frequencies net database: improvements for storage of individual genotypes and analysis of existing data
EJM dos Santos, A McCabe, FF Gonzalez-Galarza, AR Jones, ...
Human immunology 77 (3), 238-248, 2016
The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary
G Mayer, L Montecchi-Palazzi, D Ovelleiro, AR Jones, PA Binz, ...
Database 2013, 2013
In silicoanalysis of HLA associations with drug-induced liver injury: use of a HLA-genotyped DNA archive from healthy volunteers
A Alfirevic, F Gonzalez-Galarza, C Bell, K Martinsson, V Platt, G Bretland, ...
Genome medicine 4 (6), 51, 2012
The mzQuantML data standard for mass spectrometry–based quantitative studies in proteomics
M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ...
Molecular & Cellular Proteomics 12 (8), 2332-2340, 2013
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO‐Proteomics Standards Initiative April 23–25, 2007 …
S Orchard, L Montechi‐Palazzi, EW Deutsch, PA Binz, AR Jones, N Paton, ...
Proteomics 7 (19), 3436-3440, 2007
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis
FF Gonzalez-Galarza, C Lawless, SJ Hubbard, J Fan, C Bessant, ...
Omics: a journal of integrative biology 16 (9), 431-442, 2012
The PSI semantic validator: a framework to check MIAPE compliance of proteomics data
L Montecchi‐Palazzi, S Kerrien, F Reisinger, B Aranda, AR Jones, ...
Proteomics 9 (22), 5112-5119, 2009
Guidelines for reporting the use of gel electrophoresis in proteomics
F Gibson, L Anderson, G Babnigg, M Baker, M Berth, PA Binz, A Borthwick, ...
Nature biotechnology 26 (8), 863-864, 2008
Capture and analysis of quantitative proteomic data
KW Lau, AR Jones, N Swainston, JA Siepen, SJ Hubbard
Proteomics 7 (16), 2787-2799, 2007
Visualisation and analysis of proteomic data from the procyclic form of Trypanosoma brucei
A Jones, A Faldas, A Foucher, E Hunt, A Tait, JM Wastling, CM Turner
Proteomics 6 (1), 259-267, 2006
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