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Markus List
Markus List
Data Science in Systems Biology, School of Life Sciences, Technical University of Munich
Verified email at tum.de - Homepage
Title
Cited by
Cited by
Year
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ...
Bioinformatics 35 (14), i436-i445, 2019
6472019
Network pharmacology: curing causal mechanisms instead of treating symptoms
C Nogales, ZM Mamdouh, M List, C Kiel, AI Casas, HHHW Schmidt
Trends in pharmacological sciences 43 (2), 136-150, 2022
4052022
Mass-spectrometry-based draft of the Arabidopsis proteome
J Mergner, M Frejno, M List, M Papacek, X Chen, A Chaudhary, ...
Nature 579 (7799), 409-414, 2020
3752020
Primer, pipelines, parameters: issues in 16S rRNA gene sequencing
I Abellan-Schneyder, MS Matchado, S Reitmeier, A Sommer, Z Sewald, ...
Msphere 6 (1), 10.1128/msphere. 01202-20, 2021
1932021
Arrhythmic gut microbiome signatures predict risk of type 2 diabetes
S Reitmeier, S Kiessling, T Clavel, M List, EL Almeida, TS Ghosh, ...
Cell host & microbe 28 (2), 258-272. e6, 2020
1842020
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ...
Nature communications 11 (1), 3518, 2020
1692020
Network analysis methods for studying microbial communities: A mini review
MS Matchado, M Lauber, S Reitmeier, T Kacprowski, J Baumbach, ...
Computational and structural biotechnology journal 19, 2687-2698, 2021
1562021
Immunedeconv: An R package for unified access to computational methods for estimating immune cell fractions from bulk RNA-sequencing data
G Sturm, F Finotello, M List
Bioinformatics for Cancer Immunotherapy, 223-232, 2020
1452020
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in bioinformatics 22 (2), 642-663, 2021
1442021
SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
D Bongiovanni, M Klug, O Lazareva, S Weidlich, M Biasi, S Ursu, S Warth, ...
Cell death & disease 12 (1), 50, 2021
932021
Ten simple rules for developing usable software in computational biology
M List, P Ebert, F Albrecht
PLoS computational biology 13 (1), e1005265, 2017
802017
Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data
M List, AC Hauschild, Q Tan, TA Kruse, J Mollenhauer, J Baumbach, ...
Journal of Integrative Bioinformatics 11 (2), 236, 2014
782014
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets
F Albrecht, M List, C Bock, T Lengauer
Nucleic acids research 44 (W1), W581-W586, 2016
762016
The long non-coding RNA H19 suppresses carcinogenesis and chemoresistance in hepatocellular carcinoma
CS Schultheiss, S Laggai, B Czepukojc, UK Hussein, M List, A Barghash, ...
Cell Stress 1 (1), 37, 2017
612017
KeyPathwayMinerWeb: online multi-omics network enrichment
M List, N Alcaraz, M Dissing-Hansen, HJ Ditzel, J Mollenhauer, ...
Nucleic Acids Research 44 (W1), W98-W104, 2016
602016
De novo pathway-based biomarker identification
N Alcaraz, M List, R Batra, F Vandin, HJ Ditzel, J Baumbach
Nucleic acids research 45 (16), e151-e151, 2017
572017
Privacy-preserving artificial intelligence techniques in biomedicine
R Torkzadehmahani, R Nasirigerdeh, DB Blumenthal, T Kacprowski, ...
Methods of information in medicine 61 (S 01), e12-e27, 2022
462022
On the performance of de novo pathway enrichment
R Batra, N Alcaraz, K Gitzhofer, J Pauling, HJ Ditzel, M Hellmuth, ...
NPJ systems biology and applications 3 (1), 6, 2017
452017
The AIMe registry for artificial intelligence in biomedical research
J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ...
Nature methods 18 (10), 1128-1131, 2021
442021
Quantitative comparison of within-sample heterogeneity scores for DNA methylation data
M Scherer, A Nebel, A Franke, J Walter, T Lengauer, C Bock, F Müller, ...
Nucleic acids research 48 (8), e46-e46, 2020
442020
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Articles 1–20