| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 380 | 2020 |
| Developmental trajectory of prehematopoietic stem cell formation from endothelium Q Zhu, P Gao, J Tober, L Bennett, C Chen, Y Uzun, Y Li, ED Howell, ... Blood, The Journal of the American Society of Hematology 136 (7), 845-856, 2020 | 125 | 2020 |
| Integrative bulk and single-cell profiling of premanufacture T-cell populations reveals factors mediating long-term persistence of CAR T-cell therapy GM Chen, C Chen, RK Das, P Gao, CH Chen, S Bandyopadhyay, ... Cancer Discovery 11 (9), 2186-2199, 2021 | 107 | 2021 |
| Identifying noncoding risk variants using disease-relevant gene regulatory networks L Gao, Y Uzun, P Gao, B He, X Ma, J Wang, S Han, K Tan Nature communications 9 (1), 702, 2018 | 59 | 2018 |
| Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ... Blood, The Journal of the American Society of Hematology 139 (14), 2198-2211, 2022 | 43 | 2022 |
| Transcriptional regulatory network controlling the ontogeny of hematopoietic stem cells P Gao, C Chen, ED Howell, Y Li, J Tober, Y Uzun, B He, L Gao, Q Zhu, ... Genes & Development 34 (13-14), 950-964, 2020 | 42 | 2020 |
| Risk variants disrupting enhancers of TH1 and TREG cells in type 1 diabetes P Gao, Y Uzun, B He, SE Salamati, JKM Coffey, E Tsalikian, K Tan Proceedings of the National Academy of Sciences 116 (15), 7581-7590, 2019 | 40 | 2019 |
| scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data W Yu, Y Uzun, Q Zhu, C Chen, K Tan Genome biology 21, 1-17, 2020 | 35 | 2020 |
| A second look at the performance of neural networks for keystroke dynamics using a publicly available dataset Y Uzun, K Bicakci Computers & Security 31 (5), 717-726, 2012 | 31 | 2012 |
| Epigenetic state determines inflammatory sensing in neuroblastoma AJ Wolpaw, LD Grossmann, JL Dessau, MM Dong, BJ Aaron, PA Brafford, ... Proceedings of the National Academy of Sciences 119 (6), e2102358119, 2022 | 30 | 2022 |
| Could we distinguish child users from adults using keystroke dynamics? Y Uzun, K Bicakci, Y Uzunay arXiv preprint arXiv:1511.05672, 2015 | 15 | 2015 |
| Predictive modeling of single-cell DNA methylome data enhances integration with transcriptome data Y Uzun, H Wu, K Tan Genome research 31 (1), 101-109, 2021 | 13 | 2021 |
| Endothelial MEKK3-KLF2/4 signaling integrates inflammatory and hemodynamic signals during definitive hematopoiesis Y Yang, M Mumau, J Tober, Q Zhu, L Bennett, C Hong, D Sung, T Keller, ... Blood, The Journal of the American Society of Hematology 139 (19), 2942-2957, 2022 | 9 | 2022 |
| IGF2BP family of RNA-binding proteins regulate innate and adaptive immune responses in cancer cells and tumor microenvironment IA Elcheva, CP Gowda, D Bogush, S Gornostaeva, A Fakhardo, N Sheth, ... Frontiers in immunology 14, 1224516, 2023 | 7 | 2023 |
| SINBAD: a flexible tool for single cell DNA methylation data Y Uzun, W Yu, C Chen, K Tan bioRxiv, 2021.10. 23.465577, 2021 | 4 | 2021 |
| ER stress elicits non-canonical CASP8 (caspase 8) activation on autophagosomal membranes to induce apoptosis T Hattori, KA Fundora, K Hamamoto, DM Opozda, X Liang, X Liu, J Zhang, ... Autophagy 20 (2), 349-364, 2024 | 2 | 2024 |
| Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia C Chen, W Yu, F Alikarami, Q Qiu, C Chen, J Flournoy, P Gao, Y Uzun, ... bioRxiv, 2020.12. 06.413930, 2020 | 2 | 2020 |
| Isolation of Epithelial and Stromal Cells from Colon Tissues in Homeostasis and Under Inflammatory Conditions C Morral, R Ghinnagow, T Karakasheva, Y Zhou, A Thadi, N Li, B Yoshor, ... Bio-protocol 13 (18), 2023 | 1 | 2023 |
| Ncrna-a3 Epigenetically Regulates TAL1 and Its Target Genes to Drive Erythroid Differentiation M Matur, Y Uzun, Y Qiu, S Huang Blood 142, 1077, 2023 | | 2023 |
| Approaches for benchmarking single-cell gene regulatory network inference methods Y Uzun arXiv preprint arXiv:2307.08463, 2023 | | 2023 |
Kai TanProfessor, Children's Hospital of Philadelphia, University of PennsylvaniaVerified email at chop.edu
