Milot Mirdita
Milot Mirdita
Max Planck Institute for Biophysical Chemistry
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Cited by
Cited by
HH-suite3 for fast remote homology detection and deep protein annotation
M Steinegger, M Meier, M Mirdita, H Voehringer, SJ Haunsberger, ...
BMC Bioinformatics 20 (1), 473, 2019
Uniclust databases of clustered and deeply annotated protein sequences and alignments
M Mirdita, L von den Driesch, C Galiez, MJ Martin, J Söding, M Steinegger
Nucleic Acids Research 45 (D1), D170-D176, 2017
ColabFold - Making protein folding accessible to all
M Mirdita, K Schütze, Y Moriwaki, L Heo, S Ovchinnikov, M Steinegger
bioRxiv, 2021.08.15.456425, 2021
Protein sequence analysis using the MPI bioinformatics toolkit
F Gabler, SZ Nam, S Till, M Mirdita, M Steinegger, J Söding, AN Lupas, ...
Current Protocols in Bioinformatics 72 (1), e108, 2020
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold
M Steinegger, M Mirdita, J Söding
Nature Methods 16 (7), 603-606, 2019
MMseqs2 desktop and local web server app for fast, interactive sequence searches
M Mirdita, M Steinegger, J Söding
Bioinformatics 35 (16), 2856-2858, 2019
MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
E Levy Karin, M Mirdita, J Söding
Microbiome 8 (1), 1-15, 2020
PredictProtein - Predicting Protein Structure and Function for 29 Years
M Bernhofer, C Dallago, T Karl, V Satagopam, M Heinzinger, M Littmann, ...
Nucleic Acids Research 49 (W1), W535–W540, 2021
Fast and sensitive taxonomic assignment to metagenomic contigs
M Mirdita, M Steinegger, F Breitwieser, J Soeding, E Levy Karin
Bioinformatics 37 (18), 3029–3031, 2021
Cloud prediction of protein structure and function with PredictProtein for Debian
L Kaján, G Yachdav, E Vicedo, M Steinegger, M Mirdita, C Angermüller, ...
BioMed Research International 2013, 2013
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific Reports 8 (1), 1-18, 2018
DescribePROT: database of amino acid-level protein structure and function predictions
B Zhao, A Katuwawala, CJ Oldfield, AK Dunker, E Faraggi, J Gsponer, ...
Nucleic Acids Research 49 (D1), D298-D308, 2021
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
R Zhang, M Mirdita, E Levy Karin, C Norroy, C Galiez, J Soeding
Bioinformatics 37 (19), 3364–3366, 2021
Going to extremes – a metagenomic journey into the dark matter of life
A Aevarsson, AK Kaczorowska, BT Adalsteinsson, J Ahlqvist, ...
FEMS Microbiology Letters 368 (12), fnab067, 2021
Foldseek: fast and accurate protein structure search
M van Kempen, S Kim, C Tumescheit, M Mirdita, J Soeding, M Steinegger
bioRxiv, 2022.02.07.479398, 2022
MMseqs2 profile/profile: fast and ultra-sensitive searches beyond the twilight zone
M Mirdita, H Ji, E Levy Karin, HG Sommer, C Galiez, J Soeding, ...
Protein Bioinformatics
M Mirdita, E Levy Karin, W Ge, F Simonetti, R Zhang, J Söding
Introduction to Metagenomics
M Mirdita, W Ge, F Simonetti, A Seidel, E Levy Karin, J Söding
Supplemental: Uniclust-clustered and deeply annotated protein sequence databases
M Mirdita, L von den Driesch, C Galiez, MJ Martin, J Söding, M Steinegger
Supporting Translational and Personalzed Medicine with SOA, Grid, and Cloud
B Balkenhol, M Steinegger, M Mirdita, B Rost, S Schaller, M Block, ...
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