Paolo Ribeca
Paolo Ribeca
Biomathematics and Statistics Scotland, UK
Verified email at bioss.ac.uk
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10973*2012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
37292012
The tomato genome sequence provides insights into fleshy fruit evolution
Tomato Genome Consortium
Nature 485 (7400), 635, 2012
22142012
Transcriptome and genome sequencing uncovers functional variation in humans
T Lappalainen, M Sammeth, MR Friedländer, P Ac‘t Hoen, J Monlong, ...
Nature 501 (7468), 506-511, 2013
14402013
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
11822011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177-1184, 2013
5142013
The GEM mapper: fast, accurate and versatile alignment by filtration
S Marco-Sola, M Sammeth, R Guigó, P Ribeca
Nature methods 9 (12), 1185, 2012
4792012
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, T Alioto, J Behr, ...
Nature methods 10 (12), 1185-1191, 2013
4412013
Fast computation and applications of genome mappability
T Derrien, J Estellé, SM Sola, DG Knowles, E Raineri, R Guigó, P Ribeca
PloS one 7 (1), e30377, 2012
4352012
Modelling and simulating generic RNA-Seq experiments with the flux simulator
T Griebel, B Zacher, P Ribeca, E Raineri, V Lacroix, R Guigó, M Sammeth
Nucleic acids research 40 (20), 10073-10083, 2012
2652012
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ...
Nature communications 6 (1), 1-13, 2015
2292015
Effect of predicted protein-truncating genetic variants on the human transcriptome
MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ...
Science 348 (6235), 666-669, 2015
1842015
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
P AC't Hoen, MR Friedländer, J Almlöf, M Sammeth, I Pulyakhina, ...
Nature biotechnology 31 (11), 1015-1022, 2013
1842013
Genome sequence of the olive tree, Olea europaea
F Cruz, I Julca, J Gómez-Garrido, D Loska, M Marcet-Houben, E Cano, ...
Gigascience 5 (1), 29, 2016
1172016
From useful algorithms for slowly convergent series to physical predictions based on divergent perturbative expansions
E Caliceti, M Meyer-Hermann, P Ribeca, A Surzhykov, UD Jentschura
Physics reports 446 (1-3), 1-96, 2007
962007
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17 (1), 1-19, 2016
692016
Evidence for transcript networks composed of chimeric RNAs in human cells
S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ...
PLoS One 7 (1), e28213, 2012
562012
Faster exact Markovian probability functions for motif occurrences: a DFA-only approach
P Ribeca, E Raineri
Bioinformatics 24 (24), 2839-2848, 2008
312008
Thread-cooperative, bit-parallel computation of levenshtein distance on GPU
A Chacón, S Marco-Sola, A Espinosa, P Ribeca, JC Moure
Proceedings of the 28th ACM international conference on Supercomputing, 103-112, 2014
272014
Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variants
L Greger, J Su, J Rung, PG Ferreira, T Lappalainen, ET Dermitzakis, ...
PloS one 9 (8), e104567, 2014
252014
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