Lin Wang
Lin Wang
Zymergen
Verified email at PSU.EDU - Homepage
Title
Cited by
Cited by
Year
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639, 2019
3812019
A review of computational tools for design and reconstruction of metabolic pathways
L Wang, S Dash, CY Ng, CD Maranas
Synthetic and systems biotechnology 2 (4), 243-252, 2017
732017
Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models
SHJ Chan, J Cai, L Wang, MN Simons-Senftle, CD Maranas
Bioinformatics 33 (22), 3603-3609, 2017
562017
Pathway design using de novo steps through uncharted biochemical spaces
A Kumar†, L Wang†, CY Ng†, CD Maranas
Nature communications 9 (1), 184, 2018
492018
MinGenome: An In Silico Top-Down Approach for the Synthesis of Minimized Genomes
L Wang, CD Maranas
ACS synthetic biology 7 (2), 462-473, 2018
192018
Pareto Optimality Explanation of the Glycolytic Alternatives in Nature
CY Ng, L Wang, A Chowdhury, CD Maranas
Scientific reports 9 (1), 2633, 2019
122019
Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints
SHJ Chan, L Wang, S Dash, CD Maranas
Bioinformatics 34 (24), 4248-4255, 2018
122018
Exploring the combinatorial space of complete pathways to chemicals
L Wang, CY Ng, S Dash, CD Maranas
Biochemical Society Transactions 46 (3), 513-522, 2018
52018
Recent advances in constraint and machine learning-based metabolic modeling by leveraging stoichiometric balances, thermodynamic feasibility and kinetic law formalisms
PF Suthers, CJ Foster, D Sarkar, L Wang, CD Maranas
Metabolic Engineering, 2020
32020
Building kinetic models for metabolic engineering
CJ Foster, L Wang, HV Dinh, PF Suthers, CD Maranas
Current Opinion in Biotechnology 67, 35-41, 2020
32020
Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives
JI Hendry, HV Dinh, C Foster, S Gopalakrishnan, L Wang, CD Maranas
Current Opinion in Chemical Engineering 30, 17-25, 2020
22020
Computationally Prospecting Potential Pathways from Lignin Monomers and Dimers toward Aromatic Compounds
L Wang, CD Maranas
ACS Synthetic Biology 10 (5), 1064-1076, 2021
2021
A Genome-Scale Metabolic Model of Anabaena 33047 to Guide Genetic Modifications to Overproduce Nylon Monomers
JI Hendry, HV Dinh, D Sarkar, L Wang, A Bandyopadhyay, HB Pakrasi, ...
Metabolites 11 (3), 168, 2021
2021
dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design
L Wang, V Upadhyay, CD Maranas
bioRxiv, 2021
2021
Computational methods for designing de novo metabolic pathways and genome-minimized chassis strains
L Wang
2020
MinGenome: Top-down synthesis of genome minimized strains for bioproduction
L Wang, C Maranas
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 255, 2018
2018
Principles of Systems Biology
L Wang, CD Maranas
Cell Systems 6 (2), 142-145, 2018
2018
Uncovering and Correcting the Effect of Biomass Molecular Weight Discrepancies in FBA Calculations
SHJ Chan, J Cai, L Wang, M Simons-Senftle, CD Maranas
2017 AIChE Annual Meeting, 2017
2017
Optimization Driven Top-Down Synthesis of Genome Minimized Strains for Bioproduction
L Wang, CD Maranas
2017 AIChE Annual Meeting, 2017
2017
novoStoic: Pathway design using de novo steps through uncharted biochemical spaces
L Wang, D Maranas
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