| Remarkable loop flexibility in avian influenza N1 and its implications for antiviral drug design RE Amaro, DDL Minh, LS Cheng, WM Lindstrom, AJ Olson, JH Lin, WW Li, ... Journal of the American Chemical Society 129 (25), 7764-7765, 2007 | 184 | 2007 |
| Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation JP Nilmeier, GE Crooks, DDL Minh, JD Chodera Proceedings of the National Academy of Sciences 108 (45), E1009-E1018, 2011 | 134 | 2011 |
| Molecular crowding inhibits intramolecular breathing motions in proteins L Makowski, DJ Rodi, S Mandava, DDL Minh, DB Gore, RF Fischetti Journal of molecular biology 375 (2), 529-546, 2008 | 111 | 2008 |
| The influence of macromolecular crowding on HIV-1 protease internal dynamics DDL Minh, C Chang, J Trylska, V Tozzini, JA McCammon Journal of the American Chemical Society 128 (18), 6006-6007, 2006 | 111 | 2006 |
| Optimized free energies from bidirectional single-molecule force spectroscopy DDL Minh, AB Adib Physical review letters 100 (18), 180602, 2008 | 107 | 2008 |
| Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages DDL Minh, JD Chodera The Journal of chemical physics 131 (13), 2009 | 68 | 2009 |
| The entropic cost of protein-protein association: a case study on acetylcholinesterase binding to fasciculin-2 DDL Minh, JM Bui, C Chang, T Jain, JMJ Swanson, JA McCammon Biophysical journal 89 (4), L25-L27, 2005 | 59 | 2005 |
| Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors ML Boby, D Fearon, M Ferla, M Filep, L Koekemoer, MC Robinson, ... Science 382 (6671), eabo7201, 2023 | 48 | 2023 |
| Method to predict crowding effects by postprocessing molecular dynamics trajectories: application to the flap dynamics of HIV-1 protease S Qin, DDL Minh, JA McCammon, HX Zhou The journal of physical chemistry letters 1 (1), 107-110, 2010 | 44 | 2010 |
| Understanding the Hastings algorithm DDL Minh, DL Minh Communications in Statistics-Simulation and Computation 44 (2), 332-349, 2015 | 42 | 2015 |
| Springs and speeds in free energy reconstruction from irreversible single-molecule pulling experiments DDL Minh, JA McCammon The Journal of Physical Chemistry B 112 (19), 5892-5897, 2008 | 41 | 2008 |
| Open Science Discovery of Potent Non-Covalent SARS-CoV-2 Main Protease Inhibitors COVID Moonshot Consortium, H Achdout, A Aimon, DS Alonzi, R Arbon, ... BioRxiv, 2020.10. 29.339317, 2020 | 39 | 2020 |
| X‐ray solution scattering studies of the structural diversity intrinsic to protein ensembles L Makowski, D Gore, S Mandava, D Minh, S Park, DJ Rodi, RF Fischetti Biopolymers 95 (8), 531-542, 2011 | 36 | 2011 |
| Absolute binding free energies between T4 lysozyme and 141 small molecules: calculations based on multiple rigid receptor configurations B Xie, TH Nguyen, DDL Minh Journal of chemical theory and computation 13 (6), 2930-2944, 2017 | 34 | 2017 |
| Simple entropy terms for end-point binding free energy calculations WM Menzer, C Li, W Sun, B Xie, DDL Minh Journal of chemical theory and computation 14 (11), 6035-6049, 2018 | 32 | 2018 |
| Characterization of the Pseudomonas aeruginosa NQR complex, a bacterial proton pump with roles in autopoisoning resistance DA Raba, M Rosas-Lemus, WM Menzer, C Li, X Fang, P Liang, K Tuz, ... Journal of Biological Chemistry 293 (40), 15664-15677, 2018 | 31 | 2018 |
| Bayesian analysis of isothermal titration calorimetry for binding thermodynamics TH Nguyen, AS Rustenburg, SG Krimmer, H Zhang, JD Clark, PA Novick, ... PLoS One 13 (9), e0203224, 2018 | 29 | 2018 |
| Implicit ligand theory: Rigorous binding free energies and thermodynamic expectations from molecular docking DDL Minh The Journal of chemical physics 137 (10), 2012 | 28 | 2012 |
| Wide-angle X-ray solution scattering for protein-ligand binding: multivariate curve resolution with bayesian confidence intervals DDL Minh, L Makowski Biophysical journal 104 (4), 873-883, 2013 | 27 | 2013 |
| Path integral analysis of Jarzynski’s equality: Analytical results DDL Minh, AB Adib Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 79 (2 …, 2009 | 27 | 2009 |
Prof. J. Andrew McCammonUniversity of California, San DiegoVerified email at ucsd.edu
