Juergen Cox
TitleCited byYear
MaxQuant enables high peptide identification rates, individualized ppb-range mass accuracies and proteome-wide protein quantification
J Cox, M Mann
Nature biotechnology 26 (12), 1367, 2008
72902008
Andromeda: a peptide search engine integrated into the MaxQuant environment
J Cox, N Neuhauser, A Michalski, RA Scheltema, JV Olsen, M Mann
Journal of proteome research 10 (4), 1794-1805, 2011
28552011
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
J Cox, MY Hein, CA Luber, I Paron, N Nagaraj, M Mann
Molecular & cellular proteomics 13 (9), 2513-2526, 2014
16802014
The Perseus computational platform for comprehensive analysis of (prote) omics data
S Tyanova, T Temu, P Sinitcyn, A Carlson, MY Hein, T Geiger, M Mann, ...
Nature methods 13 (9), 731, 2016
14352016
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
JV Olsen, M Vermeulen, A Santamaria, C Kumar, ML Miller, LJ Jensen, ...
Sci. Signal. 3 (104), ra3-ra3, 2010
12272010
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
LMF De Godoy, JV Olsen, J Cox, ML Nielsen, NC Hubner, F Fröhlich, ...
Nature 455 (7217), 1251, 2008
9212008
Deep proteome and transcriptome mapping of a human cancer cell line
N Nagaraj, JR Wisniewski, T Geiger, J Cox, M Kircher, J Kelso, S Pääbo, ...
Molecular systems biology 7 (1), 2011
8422011
Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
A Michalski, E Damoc, JP Hauschild, O Lange, A Wieghaus, A Makarov, ...
Molecular & Cellular Proteomics 10 (9), M111. 011015, 2011
7272011
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
J Cox, I Matic, M Hilger, N Nagaraj, M Selbach, JV Olsen, M Mann
Nature protocols 4 (5), 698, 2009
7062009
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
SA Wagner, P Beli, BT Weinert, ML Nielsen, J Cox, M Mann, C Choudhary
Molecular & Cellular Proteomics 10 (10), M111. 013284, 2011
6742011
Quantitative, high-resolution proteomics for data-driven systems biology
J Cox, M Mann
Annual review of biochemistry 80, 273-299, 2011
6212011
Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins
T Geiger, A Wehner, C Schaab, J Cox, M Mann
Molecular & Cellular Proteomics 11 (3), M111. 014050, 2012
5912012
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
S Tyanova, T Temu, J Cox
Nature protocols 11 (12), 2301, 2016
5902016
A human interactome in three quantitative dimensions organized by stoichiometries and abundances
MY Hein, NC Hubner, I Poser, J Cox, N Nagaraj, Y Toyoda, IA Gak, ...
Cell 163 (3), 712-723, 2015
5362015
More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC− MS/MS
A Michalski, J Cox, M Mann
Journal of proteome research 10 (4), 1785-1793, 2011
5242011
Super-SILAC mix for quantitative proteomics of human tumor tissue
T Geiger, J Cox, P Ostasiewicz, JR Wisniewski, M Mann
Nature methods 7 (5), 383, 2010
5222010
Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling
K Sharma, RCJ D’Souza, S Tyanova, C Schaab, JR Wiśniewski, J Cox, ...
Cell reports 8 (5), 1583-1594, 2014
4932014
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
F Gnad, S Ren, J Cox, JV Olsen, B Macek, M Oroshi, M Mann
Genome biology 8 (11), R250, 2007
4772007
Quantitative proteomics reveals subset-specific viral recognition in dendritic cells
CA Luber, J Cox, H Lauterbach, B Fancke, M Selbach, J Tschopp, S Akira, ...
Immunity 32 (2), 279-289, 2010
4652010
Is proteomics the new genomics?
J Cox, M Mann
Cell 130 (3), 395-398, 2007
4482007
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Articles 1–20