Costas D. Maranas
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Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
AP Burgard, P Pharkya, CD Maranas
Biotechnology and bioengineering 84 (6), 647-657, 2003
Managing demand uncertainty in supply chain planning
A Gupta, CD Maranas
Computers & chemical engineering 27 (8-9), 1219-1227, 2003
OptStrain: a computational framework for redesign of microbial production systems
P Pharkya, AP Burgard, CD Maranas
Genome research 14 (11), 2367-2376, 2004
αBB: A global optimization method for general constrained nonconvex problems
IP Androulakis, CD Maranas, CA Floudas
Journal of Global Optimization 7 (4), 337-363, 1995
Flux coupling analysis of genome-scale metabolic network reconstructions
AP Burgard, EV Nikolaev, CH Schilling, CD Maranas
Genome research 14 (2), 301-312, 2004
In silico design and adaptive evolution of Escherichia coli for production of lactic acid
SS Fong, AP Burgard, CD Herring, EM Knight, FR Blattner, CD Maranas, ...
Biotechnology and bioengineering 91 (5), 643-648, 2005
OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions
S Ranganathan, PF Suthers, CD Maranas
PLoS Comput Biol 6 (4), e1000744, 2010
Optimization based automated curation of metabolic reconstructions
VS Kumar, MS Dasika, CD Maranas
BMC bioinformatics 8 (1), 1-16, 2007
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
P Pharkya, CD Maranas
Metabolic engineering 8 (1), 1-13, 2006
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities
AR Zomorrodi, CD Maranas
PLoS Comput Biol 8 (2), e1002363, 2012
Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA
P Xu, S Ranganathan, ZL Fowler, CD Maranas, MAG Koffas
Metabolic engineering 13 (5), 578-587, 2011
Global optimization in generalized geometric programming
CD Maranas, CA Floudas
Computers & Chemical Engineering 21 (4), 351-369, 1997
Finding all solutions of nonlinearly constrained systems of equations
CD Maranas, CA Floudas
Journal of Global Optimization 7 (2), 143-182, 1995
Optimization‐based framework for inferring and testing hypothesized metabolic objective functions
AP Burgard, CD Maranas
Biotechnology and bioengineering 82 (6), 670-677, 2003
Synthetic biology of cyanobacteria: unique challenges and opportunities
BM Berla, R Saha, CM Immethun, CD Maranas, TS Moon, H Pakrasi
Frontiers in microbiology 4, 246, 2013
Creating multiple-crossover DNA libraries independent of sequence identity
S Lutz, M Ostermeier, GL Moore, CD Maranas, SJ Benkovic
Proceedings of the National Academy of Sciences 98 (20), 11248-11253, 2001
GrowMatch: an automated method for reconciling in silico/in vivo growth predictions
VS Kumar, CD Maranas
PLoS Comput Biol 5 (3), e1000308, 2009
Mid-term supply chain planning under demand uncertainty: customer demand satisfaction and inventory management
A Gupta, CD Maranas, CM McDonald
Computers & Chemical Engineering 24 (12), 2613-2621, 2000
A two-stage modeling and solution framework for multisite midterm planning under demand uncertainty
A Gupta, CD Maranas
Industrial & Engineering Chemistry Research 39 (10), 3799-3813, 2000
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