| Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012 | 843 | 2012 |
| Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011 | 731 | 2011 |
| The bonobo genome compared with the chimpanzee and human genomes K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ... Nature 486 (7404), 527-531, 2012 | 694 | 2012 |
| Recombination difference between sexes: a role for haploid selection T Lenormand, J Dutheil PLoS biology 3 (3), e63, 2005 | 285 | 2005 |
| Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection A Hobolth, JY Dutheil, J Hawks, MH Schierup, T Mailund Genome research 21 (3), 349-356, 2011 | 258 | 2011 |
| The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species EH Stukenbrock, T Bataillon, JY Dutheil, TT Hansen, R Li, M Zala, ... Genome research 21 (12), 2157-2166, 2011 | 232 | 2011 |
| Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species EH Stukenbrock, FB Christiansen, TT Hansen, JY Dutheil, MH Schierup Proceedings of the National Academy of Sciences 109 (27), 10954-10959, 2012 | 188 | 2012 |
| Package ‘ape’ E Paradis, S Blomberg, B Bolker, J Brown, J Claude, HS Cuong, ... Analyses of phylogenetics and evolution, version, 2.4-1, 2018 | 186 | 2018 |
| Bio++: efficient extensible libraries and tools for computational molecular evolution L Guéguen, S Gaillard, B Boussau, M Gouy, M Groussin, NC Rochette, ... Molecular biology and evolution 30 (8), 1745-1750, 2013 | 177 | 2013 |
| Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs J Dutheil, B Boussau BMC evolutionary biology 8, 1-12, 2008 | 165 | 2008 |
| Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics J Dutheil, S Gaillard, E Bazin, S Glémin, V Ranwez, N Galtier, K Belkhir BMC bioinformatics 7 (1), 1-6, 2006 | 139 | 2006 |
| APE: analyses of phylogenetics and evolution E Paradis, K Strimmer, J Claude, G Jobb, R Opgen-Rhein, J Dutheil, ... R package version 1 (4), 2006 | 137 | 2006 |
| A model-based approach for detecting coevolving positions in a molecule J Dutheil, T Pupko, A Jean-Marie, N Galtier Molecular biology and evolution 22 (9), 1919-1928, 2005 | 134 | 2005 |
| Ancestral population genomics: the coalescent hidden Markov model approach JY Dutheil, G Ganapathy, A Hobolth, T Mailund, MK Uyenoyama, ... Genetics 183 (1), 259-274, 2009 | 131 | 2009 |
| A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi JY Dutheil, G Mannhaupt, G Schweizer, C MK Sieber, M Münsterkötter, ... Genome biology and evolution 8 (3), 681-704, 2016 | 127 | 2016 |
| A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species T Mailund, AE Halager, M Westergaard, JY Dutheil, K Munch, ... PLoS genetics 8 (12), e1003125, 2012 | 125 | 2012 |
| A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species T Mailund, AE Halager, M Westergaard, JY Dutheil, K Munch, ... PLoS genetics 8 (12), e1003125, 2012 | 125 | 2012 |
| Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model T Mailund, JY Dutheil, A Hobolth, G Lunter, MH Schierup PLoS genetics 7 (3), e1001319, 2011 | 110 | 2011 |
| The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis M Tollot, D Assmann, C Becker, J Altmüller, JY Dutheil, CE Wegner, ... PLoS pathogens 12 (6), e1005697, 2016 | 95 | 2016 |
| MafFilter: a highly flexible and extensible multiple genome alignment files processor JY Dutheil, S Gaillard, EH Stukenbrock BMC genomics 15 (1), 1-10, 2014 | 84 | 2014 |
Mikkel Heide SchierupProfessor, Bioinformatics Research Centre, Aarhus UniversityVerified email at birc.au.dk
