| Single-cell genetic analysis of ductal carcinoma in situ and invasive breast cancer reveals enormous tumor heterogeneity yet conserved genomic imbalances and gain of MYC during … K Heselmeyer-Haddad, LYB Garcia, A Bradley, C Ortiz-Melendez, WJ Lee, ... The American journal of pathology 181 (5), 1807-1822, 2012 | 140 | 2012 |
| Protein–protein interaction networks and subnetworks in the biology of disease RK Nibbe, SA Chowdhury, M Koyutürk, R Ewing, MR Chance Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (3), 357-367, 2011 | 104 | 2011 |
| Subnetwork state functions define dysregulated subnetworks in cancer SA Chowdhury, RK Nibbe, MR Chance, M Koyutürk Journal of Computational Biology 18 (3), 263-281, 2011 | 87 | 2011 |
| Network signatures of survival in glioblastoma multiforme VN Patel, G Gokulrangan, SA Chowdhury, Y Chen, AE Sloan, M Koyutürk, ... PLoS computational biology 9 (9), e1003237, 2013 | 79 | 2013 |
| Identification of coordinately dysregulated subnetworks in complex phenotypes SA Chowdhury, M Koyutürk Pacific Symposium on Biocomputing, 2010, 2010 | 65 | 2010 |
| Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics SA Chowdhury, SE Shackney, K Heselmeyer-Haddad, T Ried, ... PLoS computational biology 10 (7), e1003740, 2014 | 61 | 2014 |
| Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations SA Chowdhury, SE Shackney, K Heselmeyer-Haddad, T Ried, ... Bioinformatics 29 (13), i189-i198, 2013 | 58 | 2013 |
| Single-cell genetic analysis reveals insights into clonal development of prostate cancers and indicates loss of PTEN as a marker of poor prognosis KM Heselmeyer-Haddad, LYB Garcia, A Bradley, L Hernandez, Y Hu, ... The American journal of pathology 184 (10), 2671-2686, 2014 | 41 | 2014 |
| Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea Y Liu, S Patel, R Nibbe, S Maxwell, SA Chowdhury, M Koyuturk, X Zhu, ... Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 14, 2011 | 39 | 2011 |
| Inferring models of multiscale copy number evolution for single-tumor phylogenetics SA Chowdhury, EM Gertz, D Wangsa, K Heselmeyer-Haddad, T Ried, ... Bioinformatics 31 (12), i258-i267, 2015 | 33 | 2015 |
| Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis D Wangsa, SA Chowdhury, M Ryott, EM Gertz, G Elmberger, G Auer, ... International journal of cancer 138 (1), 98-109, 2016 | 24 | 2016 |
| A Novel Subset of Human Tumors That Simultaneously Overexpress Multiple E2F-responsive Genes Found in Breast, Ovarian, and Prostate Cancers SE Shackney, SA Chowdhury, R Schwartz Cancer Informatics 5, 89-100, 2014 | 21 | 2014 |
| FISHtrees 3.0: tumor phylogenetics using a ploidy probe EM Gertz, SA Chowdhury, WJ Lee, D Wangsa, K Heselmeyer-Haddad, ... PLoS One 11 (6), e0158569, 2016 | 18 | 2016 |
| Subnetwork state functions define dysregulated subnetworks in cancer SA Chowdhury, RK Nibbe, MR Chance, M Koyutürk Research in Computational Molecular Biology: 14th Annual International …, 2010 | 14* | 2010 |
| An integrated approach to blood-based cancer diagnosis and biomarker discovery. MR Min, S Chowdhury, Y Qi, A Stewart, R Ostroff Pacific Symposium on Biocomputing, 2014, 2014 | 11 | 2014 |
| Identifying stage-specific protein subnetworks for colorectal cancer S Erten, SA Chowdhury, X Guan, RK Nibbe, JS Barnholtz-Sloan, ... BMC proceedings 6, 1-12, 2012 | 8 | 2012 |
| A new orchid from Kameng frontier district, NEFA, Assam J Joseph, S Chowdhury Journal of the Bombay Natural History Society 63, 54-56, 1966 | 5 | 1966 |
| Knowledge-driven sparse learning approach to identifying interpretable high-order feature interactions for system output prediction R Min, Y Qi, SA Chowdhury US Patent App. 14/243,920, 2014 | 3 | 2014 |
| Systems and methods of selecting combinatorial coordinately dysregulated biomarker subnetworks M Koyuturk, M Chance, R Nibbe, SA Chowdhury US Patent App. 13/642,777, 2014 | 2 | 2014 |
| Single-cell genetic analysis reveals insights into clonal development of cervical cancer and confirms TERC as an early and dominant aberration LS Hernandez, A Bradley, T Gaiser, S Andersson, EM Gertz, ... Cancer Research 75 (15_Supplement), 4833-4833, 2015 | | 2015 |
Alejandro SchafferComputer Scientist, National Institutes of HealthVerified email at nih.gov
