| The physics and physical chemistry of molecular machines RD Astumian, S Mukherjee, A Warshel ChemPhysChem 17 (12), 1719-1741, 2016 | 132 | 2016 |
| PRIMO/PRIMONA: a coarse‐grained model for proteins and nucleic acids that preserves near‐atomistic accuracy SM Gopal, S Mukherjee, YM Cheng, M Feig Proteins: Structure, Function, and Bioinformatics 78 (5), 1266-1281, 2010 | 116 | 2010 |
| Electrostatic origin of the mechanochemical rotary mechanism and the catalytic dwell of F1-ATPase S Mukherjee, A Warshel Proceedings of the National Academy of Sciences 108 (51), 20550-20555, 2011 | 110 | 2011 |
| Non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis J Das, S Mukherjee, A Mitra, D Bhattacharyya Journal of Biomolecular Structure and Dynamics 24 (2), 149-161, 2006 | 88 | 2006 |
| Role of hydrogen bonds in protein− DNA recognition: Effect of nonplanar amino groups S Mukherjee, S Majumdar, D Bhattacharyya The Journal of Physical Chemistry B 109 (20), 10484-10492, 2005 | 86 | 2005 |
| Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis S Mukherjee, M Bansal, D Bhattacharyya Journal of computer-aided molecular design 20, 629-645, 2006 | 69 | 2006 |
| Realistic simulations of the coupling between the protomotive force and the mechanical rotation of the F0-ATPase S Mukherjee, A Warshel Proceedings of the National Academy of Sciences 109 (37), 14876-14881, 2012 | 63 | 2012 |
| Dissecting the role of the γ-subunit in the rotary–chemical coupling and torque generation of F1-ATPase S Mukherjee, A Warshel Proceedings of the National Academy of Sciences 112 (9), 2746-2751, 2015 | 59 | 2015 |
| DNA bending propensity in the presence of base mismatches: implications for DNA repair M Sharma, AV Predeus, S Mukherjee, M Feig The Journal of Physical Chemistry B 117 (20), 6194-6205, 2013 | 55 | 2013 |
| An effective coarse‐grained model for biological simulations: recent refinements and validations S Vicatos, A Rychkova, S Mukherjee, A Warshel Proteins: Structure, Function, and Bioinformatics 82 (7), 1168-1185, 2014 | 48 | 2014 |
| Deciphering the mismatch recognition cycle in MutS and MSH2-MSH6 using normal-mode analysis S Mukherjee, SM Law, M Feig Biophysical journal 96 (5), 1707-1720, 2009 | 37 | 2009 |
| The FOF1 ATP synthase: from atomistic three-dimensional structure to the rotary-chemical function S Mukherjee, A Warshel Photosynthesis research 134, 1-15, 2017 | 32 | 2017 |
| Torque, chemistry and efficiency in molecular motors: a study of the rotary–chemical coupling in F1-ATPase S Mukherjee, RP Bora, A Warshel Quarterly reviews of biophysics 48 (4), 395-403, 2015 | 32 | 2015 |
| Simulating the dynamics of the mechanochemical cycle of myosin-V S Mukherjee, R Alhadeff, A Warshel Proceedings of the National Academy of Sciences 114 (9), 2259-2264, 2017 | 30 | 2017 |
| Electrostatic origin of the catalytic effect of a supramolecular host catalyst MP Frushicheva, S Mukherjee, A Warshel The Journal of Physical Chemistry B 116 (45), 13353-13360, 2012 | 29 | 2012 |
| Simulating the pulling of stalled elongated peptide from the ribosome by the translocon A Rychkova, S Mukherjee, RP Bora, A Warshel Proceedings of the National Academy of Sciences 110 (25), 10195-10200, 2013 | 28 | 2013 |
| Conformational change in MSH2-MSH6 upon binding DNA coupled to ATPase activity S Mukherjee, M Feig Biophysical journal 96 (11), L63-L65, 2009 | 28 | 2009 |
| Electrostatic origin of the unidirectionality of walking myosin V motors S Mukherjee, A Warshel Proceedings of the National Academy of Sciences 110 (43), 17326-17331, 2013 | 23 | 2013 |
| Protein interaction maps using yeast two-hybrid assay S Mukherjee, S Bal, P Saha CURRENT SCIENCE-BANGALORE- 81 (5), 458-464, 2001 | 21 | 2001 |
| Effect of phosphorothioate chirality on the grooves of DNA double helices: a molecular dynamics study S Mukherjee, D Bhattacharyya Biopolymers: Original Research on Biomolecules 73 (2), 269-282, 2004 | 19 | 2004 |
