Jaime Huerta-Cepas - Google Scholar Citations

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	All	Since 2014
Citations	11831	10488
h-index	33	28
i10-index	43	40

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Co-authors

Peer BorkEMBLVerified email at embl.de
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), BerlinVerified email at embl.de
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichVerified email at isb-sib.ch
Lars Juhl JensenNovo Nordisk Foundation Center for Protein ResearchVerified email at cpr.ku.dk
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Joaquin DopazoHead of the Clinical Bioinformatics Area, FPS, Hospital Virgen del Rocio, Sevilla, SpainVerified email at juntadeandalucia.es
Shinichi SunagawaAssistant Professor of Microbiome Research, Institute of Microbiology, ETH ZurichVerified email at ethz.ch
Michael Kuhnstaff scientist in the lab of Peer Bork, EMBLVerified email at embl.de
Luis Pedro CoelhoISTBI, Fudan UniversityVerified email at fudan.edu.cn
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Marina Marcet-HoubenBSCVerified email at bsc.es
Leszek PryszczIIMCB, WarsawVerified email at iimcb.gov.pl
Falk HildebrandQuadram Institute, Earlham InstituteVerified email at quadram.ac.uk
Hernan DopazoProfessor of evolutionary and population genomicsVerified email at ege.fcen.uba.ar
Salvador Capella-GutiérrezBarcelona Supercomputing Centre (BSC)Verified email at bsc.es
Georg ZellerEMBL, HeidelbergVerified email at embl.de
Pablo MinguezResearcher - IIS Fundación Jiménez Díaz (Madrid, Spain)Verified email at quironsalud.es
françois serraComputational Biology Group - BSCVerified email at bsc.es
Simone S LiEMBO Research Fellow, Novo Nordisk Center for Biosustainability (Technical University of Denmark)Verified email at biosustain.dtu.dk

Jaime Huerta-Cepas

Group Leader at CBGP (UPM-INIA), Madrid, Spain

Verified email at embl.de - Homepage

Phylogenomics Phylogenetics Evolution Computational Biology Metagenomics


Title	Cited by	Year
STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2014	4891	2014
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1090	2014
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2015	750	2015
Genome sequence of the pea aphid Acyrthosiphon pisum International Aphid Genomics Consortium PLoS biology 8 (2), e1000313, 2010	688	2010
ETE 3: reconstruction, analysis, and visualization of phylogenomic data J Huerta-Cepas, F Serra, P Bork Molecular biology and evolution 33 (6), 1635-1638, 2016	461	2016
ETE: a python Environment for Tree Exploration J Huerta-Cepas, J Dopazo, T Gabaldón BMC bioinformatics 11 (1), 24, 2010	357	2010
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014	347	2014
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2018	333	2018
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017	273	2017
Durable coexistence of donor and recipient strains after fecal microbiota transplantation SS Li, A Zhu, V Benes, PI Costea, R Hercog, F Hildebrand, ... Science 352 (6285), 586-589, 2016	226	2016
The human phylome J Huerta-Cepas, H Dopazo, J Dopazo, T Gabaldón Genome biology 8 (6), R109, 2007	179	2007
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, M Marcet-Houben, ... Nucleic acids research 42 (D1), D897-D902, 2013	165	2013
PhylomeDB v3. 0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, I Denisov, D Kormes, ... Nucleic acids research 39 (suppl_1), D556-D560, 2010	159	2010
From genes to functional classes in the study of biological systems F Al-Shahrour, L Arbiza, H Dopazo, J Huerta-Cepas, P Mínguez, ... BMC bioinformatics 8 (1), 114, 2007	152	2007
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ... Nucleic acids research 39 (suppl_2), W470-W474, 2011	149	2011
Next station in microarray data analysis: GEPAS D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, ... Nucleic Acids Research 34 (suppl_2), W486-W491, 2006	147	2006
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233, 2018	140	2018
MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score LP Pryszcz, J Huerta-Cepas, T Gabaldon Nucleic acids research 39 (5), e32-e32, 2010	121	2010
PhylomeDB: a database for genome-wide collections of gene phylogenies J Huerta-Cepas, A Bueno, J Dopazo, T Gabaldón Nucleic acids research 36 (suppl_1), D491-D496, 2007	119	2007
Interoperability with Moby 1.0—It's better than sharing your toothbrush BioMoby Consortium Briefings in Bioinformatics 9 (3), 220-231, 2008	103	2008

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