Jaime Huerta-Cepas - Google Scholar

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	All	Since 2015
Citations	15630	13902
h-index	36	28
i10-index	46	44

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Co-authors

Peer BorkEMBLVerified email at embl.de
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), BerlinVerified email at embl.de
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichVerified email at isb-sib.ch
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Lars Juhl JensenNovo Nordisk Foundation Center for Protein ResearchVerified email at cpr.ku.dk
Joaquin DopazoHead of the Clinical Bioinformatics Area, FPS, Hospital Virgen del Rocio, Sevilla, SpainVerified email at juntadeandalucia.es
Shinichi SunagawaAssistant Professor of Microbiome Research, Institute of Microbiology, ETH ZurichVerified email at ethz.ch
Michael Kuhnstaff scientist in the lab of Peer Bork, EMBLVerified email at embl.de
Luis Pedro CoelhoISTBI, Fudan UniversityVerified email at fudan.edu.cn
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Falk HildebrandQuadram Institute, Earlham InstituteVerified email at quadram.ac.uk
Marina Marcet-HoubenBSCVerified email at bsc.es
Salvador Capella-GutiérrezBarcelona Supercomputing Centre (BSC)Verified email at bsc.es
Georg ZellerEMBL, HeidelbergVerified email at embl.de
Hernan DopazoProfessor of evolutionary and population genomicsVerified email at ege.fcen.uba.ar
françois serraComputational Biology Group - BSCVerified email at bsc.es
Pablo MinguezResearcher - IIS Fundación Jiménez Díaz (Madrid, Spain)Verified email at quironsalud.es
Simone S LiEMBO Research Fellow, Novo Nordisk Center for Biosustainability (Technical University of Denmark)Verified email at biosustain.dtu.dk
Paul Igor CosteaBASFVerified email at basf.com

Jaime Huerta-Cepas

Group Leader at CBGP (UPM-INIA), Madrid, Spain

Verified email at embl.de - Homepage

Phylogenomics Phylogenetics Evolution Computational Biology Metagenomics


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STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015	5893	2015
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019	1595	2019
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1222	2014
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	1036	2016
Genome sequence of the pea aphid Acyrthosiphon pisum International Aphid Genomics Consortium PLOS biol 8 (2), e1000313, 2010	763	2010
ETE 3: reconstruction, analysis, and visualization of phylogenomic data J Huerta-Cepas, F Serra, P Bork Molecular biology and evolution 33 (6), 1635-1638, 2016	649	2016
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017	488	2017
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014	383	2014
ETE: a python Environment for Tree Exploration J Huerta-Cepas, J Dopazo, T Gabaldón BMC bioinformatics 11 (1), 24, 2010	378	2010
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018	278	2018
Durable coexistence of donor and recipient strains after fecal microbiota transplantation SS Li, A Zhu, V Benes, PI Costea, R Hercog, F Hildebrand, ... Science 352 (6285), 586-589, 2016	260	2016
The human phylome J Huerta-Cepas, H Dopazo, J Dopazo, T Gabaldón Genome biology 8 (6), R109, 2007	190	2007
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, M Marcet-Houben, ... Nucleic acids research 42 (D1), D897-D902, 2014	179	2014
PhylomeDB v3. 0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, I Denisov, D Kormes, ... Nucleic acids research 39 (suppl_1), D556-D560, 2010	166	2010
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ... Nucleic acids research 39 (suppl_2), W470-W474, 2011	157	2011
From genes to functional classes in the study of biological systems F Al-Shahrour, L Arbiza, H Dopazo, J Huerta-Cepas, P Mínguez, ... BMC bioinformatics 8 (1), 1-17, 2007	156	2007
Next station in microarray data analysis: GEPAS D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, ... Nucleic Acids Research 34 (suppl_2), W486-W491, 2006	148	2006
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019	146	2019
MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score LP Pryszcz, J Huerta-Cepas, T Gabaldon Nucleic acids research 39 (5), e32-e32, 2011	130	2011
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	128	2016

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