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Björn Grüning
Björn Grüning
Verified email at informatik.uni-freiburg.de - Homepage
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Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
44562018
deepTools2: a next generation web server for deep-sequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ...
Nucleic acids research 44 (W1), W160-W165, 2016
37042016
deepTools: a flexible platform for exploring deep-sequencing data
F Ramírez, F Dündar, S Diehl, BA Grüning, T Manke
Nucleic acids research 42 (W1), W187-W191, 2014
17992014
Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations
D Schubert, C Bode, R Kenefeck, TZ Hou, JB Wing, A Kennedy, ...
Nature medicine 20 (12), 1410-1416, 2014
7712014
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
6002018
High-resolution TADs reveal DNA sequences underlying genome organization in flies
F Ramírez, V Bhardwaj, L Arrigoni, KC Lam, BA Grüning, J Villaveces, ...
Nature communications 9 (1), 189, 2018
4982018
Small-molecule conversion of toxic oligomers to nontoxic β-sheet–rich amyloid fibrils
J Bieschke, M Herbst, T Wiglenda, RP Friedrich, A Boeddrich, F Schiele, ...
Nature Chemical Biology 8 (1), 93-101, 2011
4572011
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease
R Gilsbach, S Preissl, BA Grüning, T Schnick, L Burger, V Benes, A Würch, ...
Nature communications 5 (1), 5288, 2014
2762014
BioContainers: an open-source and community-driven framework for software standardization
F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ...
Bioinformatics 33 (16), 2580-2582, 2017
1952017
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
R Gilsbach, M Schwaderer, S Preissl, BA Grüning, D Kranzhöfer, ...
Nature communications 9 (1), 391, 2018
1692018
NCBI BLAST+ integrated into Galaxy
PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo
Gigascience 4 (1), s13742-015-0080-7, 2015
1682015
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
1432016
StreptomeDB: a resource for natural compounds isolated from Streptomyces species
X Lucas, C Senger, A Erxleben, BA Grüning, K Döring, J Mosch, ...
Nucleic acids research 41 (D1), D1130-D1136, 2012
1402012
Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
PJA Cock, BA Grüning, K Paszkiewicz, L Pritchard
PeerJ 1, e167, 2013
1332013
SuperScent—a database of flavors and scents
M Dunkel, U Schmidt, S Struck, L Berger, B Gruening, J Hossbach, ...
Nucleic Acids Research 37 (suppl_1), D291-D294, 2009
1242009
Strategies for analyzing bisulfite sequencing data
K Wreczycka, A Gosdschan, D Yusuf, B Grüning, Y Assenov, A Akalin
Journal of biotechnology 261, 105-115, 2017
1212017
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization
J Wolff, V Bhardwaj, S Nothjunge, G Richard, G Renschler, R Gilsbach, ...
Nucleic acids research 46 (W1), W11-W16, 2018
1192018
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
1192018
pyGenomeTracks: reproducible plots for multivariate genomic data sets
L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj, R Backofen, B Grüning, ...
Bioinformatics, 2021
1122021
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell systems 6 (6), 631-635, 2018
1082018
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