Bernhard Palsson

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Citations	95121	36633
h-index	158	93
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Co-authors

Adam FeistUCSD / DTUVerified email at ucsd.edu
Ines ThieleNational University of Ireland, GalwayVerified email at nuigalway.ie
Nathan E LewisAssociate Professor, University of California, San DiegoVerified email at ucsd.edu
Jonathan MonkUC San DiegoVerified email at ucsd.edu
Markus HerrgardCTO, BioInnovation InstituteVerified email at novo.dk
Aarash BordbarSinopia BiosciencesVerified email at sinopiabio.com
Nathan D. PriceCo-CEO Onegevity; Professor, Institute for Systems BiologyVerified email at systemsbiology.org
Daniel C. ZielinskiProject Scientist, University of California San DiegoVerified email at ucsd.edu
Zachary A. KingDevOps Engineer, AmyrisVerified email at ucsd.edu
Jason PapinProfessor of Biomedical Engineering, University of VirginiaVerified email at virginia.edu
Stephen S FongVirginia Commonwealth UniversityVerified email at vcu.edu
Giuseppe PagliaSchool of Medicine and Surgery. Università di Milano-BicoccaVerified email at unimib.it
Laurence YangQueen's UniversityVerified email at queensu.ca
Jeff OrthComputational Biologist, X, the moonshot factoryVerified email at x.team
Karsten ZenglerUniversity of California, San DiegoVerified email at eng.ucsd.edu
Joshua A. LermanDirector of Computation, Bota BiosciencesVerified email at bota.bio
Jan SchellenbergerGrail Bio, LinkedIn, UC San DiegoVerified email at grailbio.com
Edward J. O'BrienSr. Scientist, Seres TherapeuticsVerified email at serestherapeutics.com
Donghyuk KimAssociate Professor, School of Energy and Chemical Engineering, UNISTVerified email at unist.ac.kr
James YurkovichTranslational Research Fellow at the Institute for Systems BiologyVerified email at systemsbiology.org

Bernhard Palsson

UCSD

Verified email at eng.ucsd.edu - Homepage

bioengineering systems biology metabolism cell factories design infectious disease


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
What is flux balance analysis? JD Orth, I Thiele, BØ Palsson Nature biotechnology 28 (3), 245-248, 2010	2835	2010
Escherichia coli and Salmonella FC Neidhardt Typhimurium Cellular and Molecular Biology, 1987	1613	1987
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007	1542	2007
A protocol for generating a high-quality genome-scale metabolic reconstruction I Thiele, BØ Palsson Nature protocols 5 (1), 93, 2010	1458	2010
Global reconstruction of the human metabolic network based on genomic and bibliomic data NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ... Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007	1427	2007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290, 2011	1381	2011
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network J Förster, I Famili, P Fu, BØ Palsson, J Nielsen Genome research 13 (2), 244-253, 2003	1234	2003
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016	1198	2016
An expanded genome-scale model of Escherichia coli K-12 (i JR904 GSM/GPR) JL Reed, TD Vo, CH Schilling, BO Palsson Genome biology 4 (9), 1-12, 2003	1196	2003
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data JS Edwards, RU Ibarra, BO Palsson Nature biotechnology 19 (2), 125-130, 2001	1170	2001
Genome-scale models of microbial cells: evaluating the consequences of constraints ND Price, JL Reed, BØ Palsson Nature Reviews Microbiology 2 (11), 886-897, 2004	1141	2004
The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities JS Edwards, BO Palsson Proceedings of the National Academy of Sciences 97 (10), 5528-5533, 2000	1126	2000
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. A Varma, BO Palsson Applied and environmental microbiology 60 (10), 3724-3731, 1994	1119	1994
Metabolic flux balancing: basic concepts, scientific and practical use A Varma, BO Palsson Bio/technology 12 (10), 994-998, 1994	1055	1994
Systems biology: properties of reconstructed networks BØ Palsson Cambridge university press, 2006	1054	2006
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011 JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson Molecular systems biology 7 (1), 535, 2011	971	2011
Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	969	2009
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	964	2013
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth RU Ibarra, JS Edwards, BO Palsson Nature 420 (6912), 186-189, 2002	941	2002
Integrating high-throughput and computational data elucidates bacterial networks MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson Nature 429 (6987), 92-96, 2004	938	2004

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