Network medicine for disease module identification and drug repurposing with the NeDRex platform S Sadegh, J Skelton, E Anastasi, J Bernett, DB Blumenthal, G Galindez, ... Nature Communications 12 (1), 6848, 2021 | 46 | 2021 |
Robust disease module mining via enumeration of diverse prize-collecting Steiner trees J Bernett, D Krupke, S Sadegh, J Baumbach, SP Fekete, T Kacprowski, ... Bioinformatics 38 (6), 1600-1606, 2022 | 12 | 2022 |
Cracking the black box of deep sequence-based protein–protein interaction prediction J Bernett, DB Blumenthal, M List Briefings in Bioinformatics 25 (2), bbae076, 2024 | 9 | 2024 |
A systematic comparison of novel and existing differential analysis methods for CyTOF data L Arend, J Bernett, Q Manz, M Klug, O Lazareva, J Baumbach, ... Briefings in Bioinformatics 23 (1), bbab471, 2022 | 6 | 2022 |
Drug Response Prediction with Machine Learning: A Critical Assessment of Current Approaches J Bernett, M Picciani, M List, M Wilhelm RExPO23, 2023 | | 2023 |
CYANUS-a web platform for analyzing drug response markers in cytometry data L Arend, J Bernett, Q Manz, M Klug, O Lazareva, J Baumbach, ... RExPO22, 2022 | | 2022 |
Deep proteome profiling of mature and reticulated platelets in patients with chronic coronary syndrome using mass cytometry M Klug, J Bernett, Q Manz, L Arend, J Han, K Kirmes, O Lazareva, ... Cardiovascular Research 118 (Supplement_1), cvac066. 167, 2022 | | 2022 |
A Systematic Comparison of Differential Analysis Methods for CyTOF Data L Arend, J Bernett, Q Manz, M Klug, O Lazareva, J Baumbach, ... bioRxiv, 2021.08. 09.455609, 2021 | | 2021 |
A Systematic Comparison of Differential Analysis Methods for CyTOF Data (preprint) L Arend, J Bernett, Q Manz, M Klug, O Lazareva, J Baumbach, ... | | 2021 |