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Shujiro Okuda
Shujiro Okuda
Verified email at med.niigata-u.ac.jp - Homepage
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Cited by
Year
A metagenome-wide association study of gut microbiota in type 2 diabetes
J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ...
nature 490 (7418), 55-60, 2012
69132012
KEGG for linking genomes to life and the environment
M Kanehisa, M Araki, S Goto, M Hattori, M Hirakawa, M Itoh, T Katayama, ...
Nucleic acids research 36 (suppl_1), D480-D484, 2007
65462007
KAAS: an automatic genome annotation and pathway reconstruction server
Y Moriya, M Itoh, S Okuda, AC Yoshizawa, M Kanehisa
Nucleic acids research 35 (suppl_2), W182-W185, 2007
38952007
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
8642016
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
6662020
KEGG Atlas mapping for global analysis of metabolic pathways
S Okuda, T Yamada, M Hamajima, M Itoh, T Katayama, P Bork, S Goto, ...
Nucleic acids research 36 (suppl_2), W423-W426, 2008
5412008
jPOSTrepo: an international standard data repository for proteomes
S Okuda, Y Watanabe, Y Moriya, S Kawano, T Yamamoto, M Matsumoto, ...
Nucleic acids research 45 (D1), D1107-D1111, 2017
4882017
iPath2. 0: interactive pathway explorer
T Yamada, I Letunic, S Okuda, M Kanehisa, P Bork
Nucleic acids research 39 (suppl_2), W412-W415, 2011
3652011
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ...
Nature microbiology 1 (8), 1-8, 2016
3392016
p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
T Saito, Y Ichimura, K Taguchi, T Suzuki, T Mizushima, K Takagi, Y Hirose, ...
Nature communications 7 (1), 12030, 2016
2992016
The ProteomeXchange consortium at 10 years: 2023 update
EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ...
Nucleic acids research 51 (D1), D1539-D1548, 2023
2192023
The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomess⃞
K Hashimoto, AC Yoshizawa, S Okuda, K Kuma, S Goto, M Kanehisa
Journal of lipid research 49 (1), 183-191, 2008
2092008
Autophagy regulates lipid metabolism through selective turnover of NCoR1
T Saito, A Kuma, Y Sugiura, Y Ichimura, M Obata, H Kitamura, S Okuda, ...
Nature communications 10 (1), 1567, 2019
1672019
p62/SQSTM1-droplet serves as a platform for autophagosome formation and anti-oxidative stress response
S Kageyama, SR Gudmundsson, YS Sou, Y Ichimura, N Tamura, ...
Nature communications 12 (1), 16, 2021
1592021
Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum
A Gotoh, T Katoh, M Sakanaka, Y Ling, C Yamada, S Asakuma, ...
Scientific Reports 8 (1), 13958, 2018
1572018
Next generation sequencing‐based gene panel tests for the management of solid tumors
M Nagahashi, Y Shimada, H Ichikawa, H Kameyama, K Takabe, S Okuda, ...
Cancer science 110 (1), 6-15, 2019
1432019
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
A Nakaya, T Katayama, M Itoh, K Hiranuka, S Kawashima, Y Moriya, ...
Nucleic acids research 41 (D1), D353-D357, 2012
1292012
Senolytic vaccination improves normal and pathological age-related phenotypes and increases lifespan in progeroid mice
M Suda, I Shimizu, G Katsuumi, Y Yoshida, Y Hayashi, R Ikegami, ...
Nature Aging 1 (12), 1117-1126, 2021
1272021
Molecular insight into evolution of symbiosis between breast-fed infants and a member of the human gut microbiome Bifidobacterium longum
C Yamada, A Gotoh, M Sakanaka, M Hattie, KA Stubbs, ...
Cell chemical biology 24 (4), 515-524. e5, 2017
1042017
The jPOST environment: an integrated proteomics data repository and database
Y Moriya, S Kawano, S Okuda, Y Watanabe, M Matsumoto, T Takami, ...
Nucleic acids research 47 (D1), D1218-D1224, 2019
1012019
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