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Phil B. Pope
Phil B. Pope
Professor, Centre for Microbiome Research, Queensland University of Technology
Verified email at qut.edu.au - Homepage
Title
Cited by
Cited by
Year
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
G Henderson, F Cox, S Ganesh, A Jonker, W Young, PH Janssen
Scientific reports 5 (1), 14567, 2015
14052015
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
6032021
DRAM for distilling microbial metabolism to automate the curation of microbiome function
M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ...
Nucleic acids research 48 (16), 8883-8900, 2020
5182020
Host-linked soil viral ecology along a permafrost thaw gradient
JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ...
Nature microbiology 3 (8), 870-880, 2018
414*2018
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
PB Pope, SE Denman, M Jones, SG Tringe, K Barry, SA Malfatti, ...
Proceedings of the National Academy of Sciences 107 (33), 14793-14798, 2010
2522010
Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure
L Sun, PB Pope, VGH Eijsink, A Schnürer
Microbial biotechnology 8 (5), 815-827, 2015
2462015
The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans
SL La Rosa, ML Leth, L Michalak, ME Hansen, NA Pudlo, R Glowacki, ...
Nature communications 10 (1), 905, 2019
2382019
Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children
E Avershina, O Storrø, T Øien, R Johnsen, P Pope, K Rudi
FEMS microbiology ecology 87 (1), 280-290, 2014
2362014
Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci
PB Pope, AK Mackenzie, I Gregor, W Smith, MA Sundset, AC McHardy, ...
PloS one 7 (6), e38571, 2012
2302012
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research 45 (D1), gkw1030, 2016
2172016
Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies
PB Pope, W Smith, SE Denman, SG Tringe, K Barry, P Hugenholtz, ...
Science 333 (6042), 646-648, 2011
2132011
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data
JA Frank, Y Pan, A Tooming-Klunderud, VGH Eijsink, AC McHardy, ...
Scientific reports 6 (1), 25373, 2016
1712016
Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature
LS McKee, SL La Rosa, B Westereng, VG Eijsink, PB Pope, J Larsbrink
Environmental Microbiology Reports 13 (5), 559-581, 2021
1582021
Plant biomass degradation by gut microbiomes: more of the same or something new?
M Morrison, PB Pope, SE Denman, CS McSweeney
Current Opinion in Biotechnology 20 (3), 358-363, 2009
1532009
Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations
ÖCO Umu, JA Frank, JU Fangel, M Oostindjer, CS Da Silva, EJ Bolhuis, ...
Microbiome 3, 1-15, 2015
1522015
Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem
LM Solden, AE Naas, S Roux, RA Daly, WB Collins, CD Nicora, ...
Nature microbiology 3 (11), 1274-1284, 2018
149*2018
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
F Xie, W Jin, H Si, Y Yuan, Y Tao, J Liu, X Wang, C Yang, Q Li, X Yan, ...
Microbiome 9 (1), 137, 2021
1412021
Do Rumen Bacteroidetes Utilize an Alternative Mechanism for Cellulose Degradation?
AE Naas, AK Mackenzie, J Mravec, J Schückel, WGT Willats, VGH Eijsink, ...
MBio 5 (4), 10.1128/mbio. 01401-14, 2014
1402014
Taxonomic metagenome sequence assignment with structured output models
KR Patil, P Haider, PB Pope, PJ Turnbaugh, M Morrison, T Scheffer, ...
Nature methods 8 (3), 191-192, 2011
1322011
The potential of class II bacteriocins to modify gut microbiota to improve host health
ÖCO Umu, C Bäuerl, M Oostindjer, PB Pope, PE Hernández, ...
PLoS One 11 (10), e0164036, 2016
1302016
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