Melissa B. Duhaime
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ...
Nature 537 (7622), 689-693, 2016
3592016
Microbes on a bottle: substrate, season and geography influence community composition of microbes colonizing marine plastic debris
S Oberbeckmann, AM Osborn, MB Duhaime
PLoS One 11 (8), e0159289, 2016
1802016
Microplastics: addressing ecological risk through lessons learned
K Syberg, FR Khan, H Selck, A Palmqvist, GT Banta, J Daley, L Sano, ...
Environmental toxicology and chemistry 34 (5), 945-953, 2015
1802015
Sulfur oxidation genes in diverse deep-sea viruses
K Anantharaman, MB Duhaime, JA Breier, KA Wendt, BM Toner, GJ Dick
Science 344 (6185), 757-760, 2014
1422014
Towards quantitative metagenomics of wild viruses and other ultra‐low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
MB Duhaime, L Deng, BT Poulos, MB Sullivan
Environmental microbiology 14 (9), 2526-2537, 2012
1332012
Fate of microplastics and other small anthropogenic litter (SAL) in wastewater treatment plants depends on unit processes employed
MR Michielssen, ER Michielssen, J Ni, MB Duhaime
Environmental Science: Water Research & Technology 2 (6), 1064-1073, 2016
1322016
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
1062019
Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities
MA Berry, TW Davis, RM Cory, MB Duhaime, TH Johengen, GW Kling, ...
Environmental microbiology 19 (3), 1149-1162, 2017
1042017
Single‐cell and population level viral infection dynamics revealed by phage FISH, a method to visualize intracellular and free viruses
E Allers, C Moraru, MB Duhaime, E Beneze, N Solonenko, ...
Environmental microbiology 15 (8), 2306-2318, 2013
1042013
Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline
MB Duhaime, MB Sullivan
Virology 434 (2), 181-186, 2012
862012
JCoast–A biologist-centric software tool for data mining and comparison of prokaryotic (meta) genomes
M Richter, T Lombardot, I Kostadinov, R Kottmann, MB Duhaime, ...
BMC bioinformatics 9 (1), 1-9, 2008
582008
Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1
MB Duhaime, A Wichels, J Waldmann, H Teeling, FO Glöckner
The ISME journal 5 (1), 107-121, 2011
572011
Distribution and modeled transport of plastic pollution in the Great Lakes, the world's largest freshwater resource
RN Cable, D Beletsky, R Beletsky, K Wigginton, BW Locke, MB Duhaime
Frontiers in Environmental Science 5, 45, 2017
562017
Megx. net: integrated database resource for marine ecological genomics
R Kottmann, I Kostadinov, MB Duhaime, PL Buttigieg, P Yilmaz, ...
Nucleic acids research 38 (suppl_1), D391-D395, 2010
562010
Diagnostic potential and interactive dynamics of the colorectal cancer virome
GD Hannigan, MB Duhaime, MT Ruffin, CC Koumpouras, PD Schloss
MBio 9 (6), 2018
492018
Subtype variation among bacterial endosymbionts of tubeworms (Annelida: Siboglinidae) from the Gulf of California
RC Vrijenhoek, M Duhaime, WJ Jones
The Biological Bulletin 212 (3), 180-184, 2007
362007
Ecological and genetic interactions between cyanobacteria and viruses in a low‐oxygen mat community inferred through metagenomics and metatranscriptomics
AA Voorhies, SD Eisenlord, DN Marcus, MB Duhaime, BA Biddanda, ...
Environmental microbiology 18 (2), 358-371, 2016
282016
Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome
GD Hannigan, MB Duhaime, D Koutra, PD Schloss
PLoS computational biology 14 (4), e1006099, 2018
272018
Comparative omics and trait analyses of marine Pseudoalteromonas phages advance the phage OTU concept
MB Duhaime, N Solonenko, S Roux, NC Verberkmoes, A Wichels, ...
Frontiers in microbiology 8, 1241, 2017
252017
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
222020
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