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A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2445 | 2017 |
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1633 | 2018 |
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1014 | 2018 |
Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567, 2020 | 926 | 2020 |
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 728 | 2018 |
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 517 | 2020 |
FXR regulates intestinal cancer stem cell proliferation T Fu, S Coulter, E Yoshihara, TG Oh, S Fang, F Cayabyab, Q Zhu, ... Cell 176 (5), 1098-1112. e18, 2019 | 388 | 2019 |
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020 | 349 | 2020 |
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing SM Karst, RM Ziels, RH Kirkegaard, EA Sřrensen, D McDonald, Q Zhu, ... Nature methods 18 (2), 165-169, 2021 | 337 | 2021 |
Evaluating the information content of shallow shotgun metagenomics B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... Msystems 3 (6), 10.1128/msystems. 00069-18, 2018 | 330 | 2018 |
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 298 | 2019 |
A gut-derived metabolite alters brain activity and anxiety behaviour in mice BD Needham, M Funabashi, MD Adame, Z Wang, JC Boktor, J Haney, ... Nature 602 (7898), 647-653, 2022 | 287 | 2022 |
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions L Narunsky-Haziza, GD Sepich-Poore, I Livyatan, O Asraf, C Martino, ... Cell 185 (20), 3789-3806. e17, 2022 | 283 | 2022 |
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort Y Qin, AS Havulinna, Y Liu, P Jousilahti, SC Ritchie, A Tokolyi, ... Nature Genetics 54 (2), 134-142, 2022 | 282 | 2022 |
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity RH Mills, PS Dulai, Y Vázquez-Baeza, C Sauceda, N Daniel, RR Gerner, ... Nature microbiology 7 (2), 262-276, 2022 | 210 | 2022 |
Greengenes2 unifies microbial data in a single reference tree D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ... Nature biotechnology 42 (5), 715-718, 2024 | 138 | 2024 |
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota ZS Hua, YN Qu, Q Zhu, EM Zhou, YL Qi, YR Yin, YZ Rao, Y Tian, YX Li, ... Nature communications 9 (1), 2832, 2018 | 136 | 2018 |
HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers Q Zhu, M Kosoy, K Dittmar BMC genomics 15, 1-18, 2014 | 134 | 2014 |
Origin of microbial biomineralization and magnetotaxis during the Archean W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ... Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017 | 131 | 2017 |