Konrad U. Förstner

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Peer BorkEMBLVerified email at embl.de
Kay NieseltUniversity of Tübingen, Interfaculty Institute for Biomedical InformaticsVerified email at uni-tuebingen.de
Alexander HerbigGroup Leader, Computational Pathogenomics, Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, GermanyVerified email at shh.mpg.de
Yanjie ChaoInstitut Pasteur of Shanghai, Chinese Academy of SciencesVerified email at tufts.edu
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Lei LiShenzhen Bay LaboratoryVerified email at szbl.ac.cn
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Gaurav DugarUniversity of AmsterdamVerified email at uva.nl
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Lars BarquistHelmholtz Institute for RNA-based Infection ResearchVerified email at helmholtz-hiri.de
Lydia MüllerUniversity of LeipzigVerified email at informatik.uni-leipzig.de
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenVerified email at sund.ku.dk
Maria V SchneiderHonorary Associate Professor Universidade NOVA de LisboaVerified email at amazon.com
Kevin FosterProfessor of Evolutionary Biology, University of OxfordVerified email at zoo.ox.ac.uk
Daniel MietchenUniversity of VirginiaVerified email at virginia.edu
M Fabiana KubkeVerified email at auckland.ac.nz
Chris CreeveyProfessor of Computational Biology, Queen’s University BelfastVerified email at qub.ac.uk
Jean MullerLaboratoire de Génétique Médicale U1112Verified email at unistra.fr
Mark HahnelFounder of http://figshare.com and former PhD Student, Imperial College LondonVerified email at imperial.ac.uk

Konrad U. Förstner

ZB MED - Information Centre for Life Sciences & TH Köln

Verified email at uni-wuerzburg.de - Homepage

Bioinformatics Computational Biology Systems Biology Transcriptomics Deep Sequencing


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Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... Nature 473 (7346), 174-180, 2011	5719	2011
Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions AJ Westermann, KU Förstner, F Amman, L Barquist, Y Chao, LN Schulte, ... Nature 529 (7587), 496-501, 2016	343	2016
Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020	325	2020
Environments shape the nucleotide composition of genomes KU Foerstner, C Von Mering, SD Hooper, P Bork EMBO reports 6 (12), 1208-1213, 2005	280	2005
High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates G Dugar, A Herbig, KU Förstner, N Heidrich, R Reinhardt, K Nieselt, ... PLoS genetics 9 (5), e1003495, 2013	268	2013
Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli MK Thomason, T Bischler, SK Eisenbart, KU Förstner, A Zhang, A Herbig, ... Journal of bacteriology 197 (1), 18-28, 2015	234	2015
Grad-seq guides the discovery of ProQ as a major small RNA-binding protein A Smirnov, KU Förstner, E Holmqvist, A Otto, R Günster, D Becher, ... Proceedings of the National Academy of Sciences 113 (41), 11591-11596, 2016	206	2016
Get the most out of your metagenome: computational analysis of environmental sequence data J Raes, KU Foerstner, P Bork Current opinion in microbiology 10 (5), 490-498, 2007	201	2007
The σB regulon in Staphylococcus aureus and its regulation J Pané-Farré, B Jonas, K Förstner, S Engelmann, M Hecker International Journal of Medical Microbiology 296 (4-5), 237-258, 2006	189	2006
The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase P Zhelyazkova, CM Sharma, KU Förstner, K Liere, J Vogel, T Börner The Plant Cell 24 (1), 123-136, 2012	184	2012
In vivo cleavage map illuminates the central role of RNase E in coding and non-coding RNA pathways Y Chao, L Li, D Girodat, KU Förstner, N Said, C Corcoran, M Śmiga, ... Molecular cell 65 (1), 39-51, 2017	160	2017
Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation K Papenfort, KU Förstner, JP Cong, CM Sharma, BL Bassler Proceedings of the National Academy of Sciences 112 (7), E766-E775, 2015	153	2015
Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition G Koch, A Yepes, KU Förstner, C Wermser, ST Stengel, J Modamio, ... Cell 158 (5), 1060-1071, 2014	148	2014
READemption—a tool for the computational analysis of deep-sequencing–based transcriptome data KU Förstner, J Vogel, CM Sharma Bioinformatics 30 (23), 3421-3423, 2014	118	2014
SmashCommunity: a metagenomic annotation and analysis tool M Arumugam, ED Harrington, KU Foerstner, J Raes, P Bork Bioinformatics 26 (23), 2977-2978, 2010	107	2010
Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq) J Babski, KA Haas, D Näther-Schindler, F Pfeiffer, KU Förstner, ... BMC genomics 17 (1), 1-19, 2016	89	2016
Splicing factors stimulate polyadenylation via USEs at non‐canonical 3′ end formation signals S Danckwardt, I Kaufmann, M Gentzel, KU Foerstner, AS Gantzert, ... The EMBO journal 26 (11), 2658-2669, 2007	88	2007
Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection C Maudet, M Mano, U Sunkavalli, M Sharan, M Giacca, KU Förstner, ... Nature communications 5 (1), 1-13, 2014	80	2014
Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis D Jäger, KU Förstner, CM Sharma, TJ Santangelo, JN Reeve BMC genomics 15 (1), 1-15, 2014	75	2014
Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation S Das, C Lindemann, BC Young, J Muller, B Österreich, N Ternette, ... Proceedings of the National Academy of Sciences 113 (22), E3101-E3110, 2016	73	2016

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