Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes W Yang, D Di Vizio, M Kirchner, H Steen, MR Freeman Molecular & Cellular Proteomics 9 (1), 54-70, 2010 | 318 | 2010 |
Robust prediction of the MASCOT score for an improved quality assessment in mass spectrometric proteomics T Koenig, BH Menze, M Kirchner, F Monigatti, KC Parker, T Patterson, ... Journal of proteome research 7 (9), 3708-3717, 2008 | 250 | 2008 |
Concise representation of mass spectrometry images by probabilistic latent semantic analysis M Hanselmann, M Kirchner, BY Renard, ER Amstalden, K Glunde, ... Analytical chemistry 80 (24), 9649-9658, 2008 | 140 | 2008 |
Toward digital staining using imaging mass spectrometry and random forests M Hanselmann, U Kothe, M Kirchner, BY Renard, ER Amstalden, ... Journal of proteome research 8 (7), 3558-3567, 2009 | 108 | 2009 |
Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti—identification of stage-specific proteases H Soblik, AE Younis, M Mitreva, BY Renard, M Kirchner, F Geisinger, ... Molecular & Cellular Proteomics 10 (12), 2011 | 105 | 2011 |
NITPICK: peak identification for mass spectrometry data BY Renard, M Kirchner, H Steen, JAJ Steen, FA Hamprecht BMC bioinformatics 9, 1-16, 2008 | 104 | 2008 |
Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis JAJ Steen, H Steen, A Georgi, K Parker, M Springer, M Kirchner, ... Proceedings of the National Academy of Sciences 105 (16), 6069-6074, 2008 | 91 | 2008 |
When less can yield more–computational preprocessing of MS/MS spectra for peptide identification BY Renard, M Kirchner, F Monigatti, AR Ivanov, J Rappsilber, D Winter, ... Proteomics 9 (21), 4978-4984, 2009 | 88 | 2009 |
Co‐regulation proteomics reveals substrates and mechanisms of APC/C‐dependent degradation SA Singh, D Winter, M Kirchner, R Chauhan, S Ahmed, N Ozlu, A Tzur, ... The EMBO journal 33 (4), 385-399, 2014 | 85 | 2014 |
Neo: Generalizing confusion matrix visualization to hierarchical and multi-output labels J Görtler, F Hohman, D Moritz, K Wongsuphasawat, D Ren, R Nair, ... Proceedings of the 2022 CHI Conference on Human Factors in Computing Systems …, 2022 | 72 | 2022 |
mz5: space-and time-efficient storage of mass spectrometry data sets M Wilhelm, M Kirchner, JAJ Steen, H Steen Molecular & Cellular Proteomics 11 (1), 2012 | 63 | 2012 |
SIMA: simultaneous multiple alignment of LC/MS peak lists B Voss, M Hanselmann, BY Renard, MS Lindner, U Köthe, M Kirchner, ... Bioinformatics 27 (7), 987-993, 2011 | 49 | 2011 |
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments X Lou, M Kirchner, BY Renard, U Köthe, S Boppel, C Graf, CT Lee, ... Bioinformatics 26 (12), 1535-1541, 2010 | 46 | 2010 |
Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS) BY Renard, B Xu, M Kirchner, F Zickmann, D Winter, S Korten, NW Brattig, ... Molecular & cellular proteomics 11 (7), M111. 014167-1-M111. 014167-12, 2012 | 39 | 2012 |
amsrpm: Robust point matching for retention time aligment of lc/ms data with r M Kirchner, B Saussen, H Steen, JAJ Steen, FA Hamprecht Journal of Statistical Software 18, 1-12, 2007 | 36 | 2007 |
An in-depth comparison of the male pediatric and adult urinary proteomes JW Froehlich, AR Vaezzadeh, M Kirchner, AC Briscoe, O Hofmann, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (5), 1044-1050, 2014 | 31 | 2014 |
Estimating the confidence of peptide identifications without decoy databases BY Renard, W Timm, M Kirchner, JAJ Steen, FA Hamprecht, H Steen Analytical chemistry 82 (11), 4314-4318, 2010 | 30 | 2010 |
A practical guide to the FLEXIQuant method S Singh, M Kirchner, JA Steen, H Steen Quantitative Methods in Proteomics, 295-319, 2012 | 27 | 2012 |
Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon A Kreshuk, M Stankiewicz, X Lou, M Kirchner, FA Hamprecht, MP Mayer International journal of mass spectrometry 302 (1-3), 125-131, 2011 | 27 | 2011 |
Design and validation of a high-throughput matrix-assisted laser desorption ionization time-of-flight mass spectrometry method for quantification of hepcidin in human plasma DS Anderson, M Kirchner, M Kellogg, LA Kalish, JY Jeong, G Vanasse, ... Analytical chemistry 83 (21), 8357-8362, 2011 | 26 | 2011 |