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Sven H. Giese
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An integrated workflow for crosslinking mass spectrometry
ML Mendes, L Fischer, ZA Chen, M Barbon, FJ O'Reilly, SH Giese, ...
Molecular systems biology 15 (9), e8994, 2019
892019
A study into the collision-induced dissociation (CID) behavior of cross-linked peptides
SH Giese, L Fischer, J Rappsilber
Molecular & Cellular Proteomics 15 (3), 1094-1104, 2016
732016
Optimized fragmentation regime for diazirine photo-cross-linked peptides
SH Giese, A Belsom, J Rappsilber
Analytical chemistry 88 (16), 8239-8247, 2016
342016
In-search assignment of monoisotopic peaks improves the identification of cross-linked peptides
S Lenz, SH Giese, L Fischer, J Rappsilber
Journal of proteome research 17 (11), 3923-3931, 2018
322018
Complementary benzophenone cross-linking/mass spectrometry photochemistry
A Belsom, G Mudd, S Giese, M Auer, J Rappsilber
Analytical chemistry 89 (10), 5319-5324, 2017
222017
Noncovalently associated peptides observed during liquid chromatography-mass spectrometry and their effect on cross-link analyses
SH Giese, A Belsom, L Sinn, L Fischer, J Rappsilber
Analytical chemistry 91 (4), 2678-2685, 2019
162019
Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry
SH Giese, LR Sinn, F Wegner, J Rappsilber
Nature communications 12 (1), 1-11, 2021
152021
Peptide retention in hydrophilic strong anion exchange chromatography is driven by charged and aromatic residues
SH Giese, Y Ishihama, J Rappsilber
Analytical chemistry 90 (7), 4635-4640, 2018
122018
Phosphoproteomic analysis of aurora kinase inhibition in monopolar cytokinesis
AN Polat, O Karayel, SH Giese, B Harmanda, E Sanal, CK Hu, BY Renard, ...
Journal of proteome research 14 (9), 4087-4098, 2015
122015
Specificity control for read alignments using an artificial reference genome-guided false discovery rate
SH Giese, F Zickmann, BY Renard
Bioinformatics 30 (1), 9-16, 2014
122014
Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis
Ö Karayel, E Şanal, SH Giese, ZC Üretmen Kagıalı, AN Polat, CK Hu, ...
Scientific reports 8 (1), 1-16, 2018
62018
Correction to Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides
SH Giese, A Belsom, J Rappsilber
Analytical Chemistry 89 (6), 3802-3803, 2017
42017
Detection of unknown amino acid substitutions using error-tolerant database search
SH Giese, F Zickmann, BY Renard
Statistical Analysis in Proteomics, 247-264, 2016
32016
Ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides
T Altenburg, SH Giese, S Wang, T Muth, BY Renard
Nature Machine Intelligence 4 (4), 378-388, 2022
12022
AHLF: ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides
T Altenburg, S Giese, S Wang, T Muth, BY Renard
bioRxiv, 2020.05. 19.101345, 2021
12021
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance
A Wittig, F Miranda, M Hölzer, T Altenburg, JM Bartoszewicz, S Beyvers, ...
Bioinformatics 38 (17), 4223-4225, 2022
2022
Leveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size Exclusion Chromatography for Proteome-wide Cross-Linking Mass Spectrometry
LR Sinn, SH Giese, M Stuiver, J Rappsilber
Analytical chemistry 94 (11), 4627-4634, 2022
2022
CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance
A Wittig, F Miranda, M Hölzer, T Altenburg, JM Bartoszewicz, S Beyvers, ...
bioRxiv, 2021.02. 03.429146, 2022
2022
Computational methods and machine learning for crosslinking mass spectrometry data analysis
SHJ Giese
PQDT-Global, 2021
2021
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