Vikram Alva
Vikram Alva
Max Planck Institute for Developmental Biology
Verified email at tuebingen.mpg.de - Homepage
Title
Cited by
Cited by
Year
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core
L Zimmermann, A Stephens, SZ Nam, D Rau, J Kübler, M Lozajic, ...
Journal of molecular biology 430 (15), 2237-2243, 2018
10602018
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
V Alva, SZ Nam, J Söding, AN Lupas
Nucleic acids research 44 (W1), W410-W415, 2016
3552016
Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria
KO Kopec, V Alva, AN Lupas
Bioinformatics 26 (16), 1927-1931, 2010
1952010
A vocabulary of ancient peptides at the origin of folded proteins
V Alva, J Söding, AN Lupas
Elife 4, e09410, 2015
1282015
A galaxy of folds
V Alva, M Remmert, A Biegert, AN Lupas, J Söding
Protein Science 19 (1), 124-130, 2010
782010
Evolutionary Relationships of Microbial Aromatic Prenyltransferases
T Bonitz, V Alva, O Saleh, AN Lupas, L Heide
PloS one 6 (11), e27336, 2011
762011
On the origin of the histone fold
V Alva, M Ammelburg, J Söding, AN Lupas
BMC structural biology 7 (1), 1-10, 2007
682007
From cyanobacteria to plants: conservation of PII functions during plastid evolution.
VR Chellamuthu, V Alva, K Forchhammer
Planta, 2012
672012
The TULIP superfamily of eukaryotic lipid-binding proteins as a mediator of lipid sensing and transport
V Alva, AN Lupas
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2016
582016
Bioinformatics of the TULIP domain superfamily
KO Kopec, V Alva, AN Lupas
Biochemical Society Transactions 39 (part 4), 1033-1038, 2011
512011
Cradle-loop barrels and the concept of metafolds in protein classification by natural descent
V Alva, KK Koretke, M Coles, AN Lupas
Current opinion in structural biology 18 (3), 358-365, 2008
512008
DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences
J Ludwiczak, A Winski, K Szczepaniak, V Alva, S Dunin-Horkawicz
Bioinformatics 35 (16), 2790-2795, 2019
502019
Protein sequence analysis using the MPI bioinformatics toolkit
F Gabler, SZ Nam, S Till, M Mirdita, M Steinegger, J Söding, AN Lupas, ...
Current Protocols in Bioinformatics 72 (1), e108, 2020
392020
Multiple C2 domains and transmembrane region proteins (MCTP s) tether membranes at plasmodesmata
ML Brault, JD Petit, F Immel, WJ Nicolas, M Glavier, L Brocard, A Gaston, ...
EMBO reports 20 (8), e47182, 2019
342019
From ancestral peptides to designed proteins
V Alva, AN Lupas
Current opinion in structural biology 48, 103-109, 2018
302018
Ribosomal proteins as documents of the transition from unstructured (poly) peptides to folded proteins
AN Lupas, V Alva
Journal of Structural Biology 198 (2), 74-81, 2017
302017
A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels
M Ammelburg, MD Hartmann, S Djuranovic, V Alva, KK Koretke, J Martin, ...
Structure 15 (12), 1577-1590, 2007
262007
COILCHECK: an interactive server for the analysis of interface regions in coiled coils
R Sowdhamini, V Alva, DP Syamala Devi
Protein and peptide letters 15 (1), 33-38, 2008
232008
Drosophila Bag-of-marbles directly interacts with the CAF40 subunit of the CCR4–NOT complex to elicit repression of mRNA targets
A Sgromo, T Raisch, C Backhaus, C Keskeny, V Alva, O Weichenrieder, ...
Rna 24 (3), 381-395, 2018
222018
Structure and evolution of N-domains in AAA metalloproteases
F Scharfenberg, J Serek-Heuberger, M Coles, MD Hartmann, M Habeck, ...
Journal of molecular biology 427 (4), 910-923, 2015
192015
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