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Vikram Alva
Vikram Alva
Max Planck Institute for Biology
Verified email at tuebingen.mpg.de - Homepage
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Cited by
Year
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core
L Zimmermann, A Stephens, SZ Nam, D Rau, J Kübler, M Lozajic, ...
Journal of molecular biology 430 (15), 2237-2243, 2018
21522018
Protein sequence analysis using the MPI bioinformatics toolkit
F Gabler, SZ Nam, S Till, M Mirdita, M Steinegger, J Söding, AN Lupas, ...
Current Protocols in Bioinformatics 72 (1), e108, 2020
5292020
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
V Alva, SZ Nam, J Söding, AN Lupas
Nucleic acids research 44 (W1), W410-W415, 2016
4082016
Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria
KO Kopec, V Alva, AN Lupas
Bioinformatics 26 (16), 1927-1931, 2010
2262010
A vocabulary of ancient peptides at the origin of folded proteins
V Alva, J Söding, AN Lupas
elife 4, e09410, 2015
2212015
DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences
J Ludwiczak, A Winski, K Szczepaniak, V Alva, S Dunin-Horkawicz
Bioinformatics 35 (16), 2790-2795, 2019
1452019
Multiple C2 domains and transmembrane region proteins (MCTP s) tether membranes at plasmodesmata
ML Brault, JD Petit, F Immel, WJ Nicolas, M Glavier, L Brocard, A Gaston, ...
EMBO reports 20 (8), e47182, 2019
1112019
Evolutionary Relationships of Microbial Aromatic Prenyltransferases
T Bonitz, V Alva, O Saleh, AN Lupas, L Heide
PloS one 6 (11), e27336, 2011
1032011
A galaxy of folds
V Alva, M Remmert, A Biegert, AN Lupas, J Söding
Protein Science 19 (1), 124-130, 2010
1022010
The TULIP superfamily of eukaryotic lipid-binding proteins as a mediator of lipid sensing and transport
V Alva, AN Lupas
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2016
842016
On the origin of the histone fold
V Alva, M Ammelburg, J Söding, AN Lupas
BMC structural biology 7, 1-10, 2007
812007
From cyanobacteria to plants: conservation of PII functions during plastid evolution.
VR Chellamuthu, V Alva, K Forchhammer
Planta, 2012
732012
Cradle-loop barrels and the concept of metafolds in protein classification by natural descent
V Alva, KK Koretke, M Coles, AN Lupas
Current opinion in structural biology 18 (3), 358-365, 2008
672008
Bioinformatics of the TULIP domain superfamily
KO Kopec, V Alva, AN Lupas
Biochemical Society Transactions 39 (part 4), 1033-1038, 2011
612011
Molecular logic of prokaryotic surface layer structures
TAM Bharat, A von Kügelgen, V Alva
Trends in microbiology 29 (5), 405-415, 2021
522021
Ribosomal proteins as documents of the transition from unstructured (poly) peptides to folded proteins
AN Lupas, V Alva
Journal of Structural Biology 198 (2), 74-81, 2017
502017
The breakthrough in protein structure prediction
AN Lupas, J Pereira, V Alva, F Merino, M Coles, MD Hartmann
Biochemical journal 478 (10), 1885-1890, 2021
482021
Drosophila Bag-of-marbles directly interacts with the CAF40 subunit of the CCR4–NOT complex to elicit repression of mRNA targets
A Sgromo, T Raisch, C Backhaus, C Keskeny, V Alva, O Weichenrieder, ...
Rna 24 (3), 381-395, 2018
452018
From ancestral peptides to designed proteins
V Alva, AN Lupas
Current opinion in structural biology 48, 103-109, 2018
432018
Structure, function and evolution of the hemerythrin‐like domain superfamily
C Alvarez‐Carreño, V Alva, A Becerra, A Lazcano
Protein Science 27 (4), 848-860, 2018
392018
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