Nick Goldman

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Ziheng YangRA Fisher Professor of Statistical Genetics, University College LondonVerified email at ucl.ac.uk
Simon WhelanNo longer in academiaVerified email at swedbank.se
Nicola De MaioScientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), CambridgeVerified email at ebi.ac.uk
Ari LöytynojaPI, Institute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
Tim MassinghamPrivateVerified email at portalbiotech.com
Rasmus NielsenUC Berkeley, University of CopenhagenVerified email at sund.ku.dk
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Asif U TamuriUniversity College London (UCL)Verified email at ucl.ac.uk
Greg SlodkowiczThe Francis Crick InstituteVerified email at crick.ac.uk
Carolin KosiolReader in Bioinformatics, University of St AndrewsVerified email at st-andrews.ac.uk
Conor R. WalkerNew York Genome Center & Columbia UniversityVerified email at nygenome.org
Paul BertoneBrown UniversityVerified email at brown.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Fabio PardiResearch Fellow, CNRS, FranceVerified email at lirmm.fr
Stefan WashietlComputer Science and Artificial Intelligence Lab, MITVerified email at mit.edu
Allen RodrigoThe School of Biological Sciences, The University of AucklandVerified email at auckland.ac.nz
Emily LeproustTwist BioscienceVerified email at twistbioscience.com
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Martin S. TaylorProfessor, MRC Human Genetics Unit, Institute of Genetics and Cancer, University of EdinburghVerified email at ed.ac.uk

Nick Goldman

EMBL-European Bioinformatics Institute

Verified email at ebi.ac.uk - Homepage

genome analysis evolution EMBL-EBI-Research-Group


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Initial sequencing and comparative analysis of the mouse genome AT Chinwalla, LL Cook, KD Delehaunty, GA Fewell, LA Fulton, RS Fulton, ... Nature 420 (6915), 520-562, 2002	8530*	2002
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007	5974	2007
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach S Whelan, N Goldman Molecular Biology and Evolution 18 (5), 691-699, 2001	2971	2001
Codon-substitution models for heterogeneous selection pressure at amino acid sites Z Yang, R Nielsen, N Goldman, AMK Pedersen Genetics 155 (1), 431-449, 2000	2586	2000
A codon-based model of nucleotide substitution for protein-coding DNA sequences. N Goldman, Z Yang Molecular Biology and Evolution 11 (5), 725-736, 1994	2359	1994
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1242	2011
Likelihood-based tests of topologies in phylogenetics N Goldman, JP Anderson, AG Rodrigo Systematic Biology 49 (4), 652-670, 2000	1230	2000
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... Nature 494 (7435), 77-80, 2013	1183	2013
An algorithm for progressive multiple alignment of sequences with insertions A Löytynoja, N Goldman Proceedings of the National Academy of Sciences of the United States of …, 2005	1026	2005
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis A Löytynoja, N Goldman Science 320 (5883), 1632-1635, 2008	873	2008
Statistical tests of models of DNA substitution N Goldman Journal of Molecular Evolution 36 (2), 182-198, 1993	868	1993
Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012	806	2012
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites WSW Wong, Z Yang, N Goldman, R Nielsen Genetics 168 (2), 1041-1051, 2004	640	2004
Systematic evaluation of spliced alignment programs for RNA-seq data PG Engstrom, T Steijger, B Sipos, GR Grant, A Kahles, G Raetsch, ... NATURE METHODS 10 (12), 1185-+, 2013	588	2013
Molecular phylogenetics: state-of-the-art methods for looking into the past S Whelan, P Lio, N Goldman TRENDS in Genetics 17 (5), 262-272, 2001	523	2001
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Z Yang, N Goldman, A Friday Molecular biology and evolution 11 (2), 316-324, 1994	522	1994
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser A Löytynoja, N Goldman BMC bioinformatics 11 (1), 579, 2010	463	2010
Models of molecular evolution and phylogeny P Liò, N Goldman Genome research 8 (12), 1233-1244, 1998	438	1998
Genome sequencing of normal cells reveals developmental lineages and mutational processes S Behjati, M Huch, R van Boxtel, W Karthaus, DC Wedge, AU Tamuri, ... Nature 513 (7518), 422-425, 2014	370	2014
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, ... Genome research 13 (1), 13-26, 2003	356	2003

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