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Elena Rivas
Elena Rivas
Molecular and Cell Biology, Harvard University
Bestätigte E-Mail-Adresse bei fas.harvard.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
A dynamic programming algorithm for RNA structure prediction including pseudoknots
E Rivas, SR Eddy
Journal of molecular biology 285 (5), 2053-2068, 1999
9751999
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
7762018
Noncoding RNA gene detection using comparative sequence analysis
E Rivas, SR Eddy
BMC bioinformatics 2 (1), 1-19, 2001
6452001
Computational identification of noncoding RNAs in E. coli by comparative genomics
E Rivas, RJ Klein, TA Jones, SR Eddy
Current biology 11 (17), 1369-1373, 2001
5492001
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
E Rivas, SR Eddy
Bioinformatics 16 (7), 583-605, 2000
3872000
Location Theory, in
JL Alonso, JL Cortés, F Lesmes, P Boucaud, E Rivas
Regional development and planning, 1964
3111964
The language of RNA: a formal grammar that includes pseudoknots
E Rivas, SR Eddy
Bioinformatics 16 (4), 334-340, 2000
2512000
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
E Rivas, J Clements, SR Eddy
Nature methods 14 (1), 45-48, 2017
2492017
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
2242021
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
1602019
Identification of differentially expressed small non‐coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
C Del Val, E Rivas, O Torres‐Quesada, N Toro, JI Jiménez‐Zurdo
Molecular microbiology 66 (5), 1080-1091, 2007
1242007
A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
E Rivas, R Lang, SR Eddy
RNA 18 (2), 193-212, 2012
1012012
Evolutionary models for insertions and deletions in a probabilistic modeling framework
E Rivas
BMC bioinformatics 6 (1), 1-30, 2005
732005
Probabilistic phylogenetic inference with insertions and deletions
E Rivas, SR Eddy
PLoS computational biology 4 (9), e1000172, 2008
722008
Estimating the power of sequence covariation for detecting conserved RNA structure
E Rivas, J Clements, SR Eddy
Bioinformatics 36 (10), 3072-3076, 2020
532020
Absence of chiral fermions in the Eichten-Preskill model
MFL Golterman, DN Petcher, E Rivas
Nuclear Physics B 395 (3), 596-622, 1993
501993
The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective
E Rivas
RNA biology 10 (7), 1185-1196, 2013
472013
RNA structure prediction using positive and negative evolutionary information
E Rivas
PLoS Computational Biology 16 (10), e1008387, 2020
312020
Parameterizing sequence alignment with an explicit evolutionary model
E Rivas, SR Eddy
BMC bioinformatics 16 (1), 1-23, 2015
282015
Chiral Yukawa models on the lattice and decoupling
JL Alonso, P Boucaud, JL Cortés, E Rivas
Physical Review D 44 (10), 3258, 1991
251991
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