Simone Daminelli
Title
Cited by
Cited by
Year
Drug promiscuity in PDB: protein binding site similarity is key
VJ Haupt, S Daminelli, M Schroeder
PLoS one 8 (6), e65894, 2013
1342013
Common neighbours and the local-community-paradigm for topological link prediction in bipartite networks
S Daminelli, JM Thomas, C Durán, CV Cannistraci
New Journal of Physics 17 (11), 2015
1052015
Polypharmacology rescored: Protein–ligand interaction profiles for remote binding site similarity assessment
S Salentin, VJ Haupt, S Daminelli, M Schroeder
Progress in biophysics and molecular biology 116 (2-3), 174-186, 2014
662014
Drug repositioning through incomplete bi-cliques in an integrated drug–target–disease network
S Daminelli, VJ Haupt, M Reimann, M Schroeder
Integrative Biology, 2012
522012
Pioneering topological methods for network-based drug–target prediction by exploiting a brain-network self-organization theory
C Durán, S Daminelli, JM Thomas, VJ Haupt, M Schroeder, ...
Briefings in bioinformatics 19 (6), 1183-1202, 2018
422018
Extraction methods of red blood cell membrane proteins for Multidimensional Protein Identification Technology (MudPIT) analysis
A De Palma, A Roveri, M Zaccarin, L Benazzi, S Daminelli, G Pantano, ...
Journal of Chromatography A 1217 (33), 5328-5336, 2010
332010
Discovery of Mycobacterium tuberculosis InhA Inhibitors by Binding Sites Comparison and Ligands Prediction
T Štular, S Lešnik, K Rožman, J Schink, M Zdouc, A Ghysels, F Liu, ...
Journal of medicinal chemistry 59 (24), 11069-11078, 2016
212016
From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns
S Salentin, MF Adasme, JC Heinrich, VJ Haupt, S Daminelli, Y Zhang, ...
Scientific reports 7 (1), 1-13, 2017
172017
Computational drug repositioning by target hopping: A use case in chagas disease
V Joachim Haupt, J E Aguilar Uvalle, S Salentin, S Daminelli, F Leonhardt, ...
Current pharmaceutical design 22 (21), 3124-3134, 2016
132016
Bioinformatics tools for mass spectrometry-based proteomics analysis
D Di Silvestre, S Daminelli, P Brunetti, PL Mauri
Reviews in Pharmaceutical and Biomedical Analysis-BENTHAM SCIENCE PUBLISHERS …, 2010
42010
Visualization and Interactive Analysis for Complex Networks by means of Lossless Network Compression
M Reimann, L Royer, S Daminelli, M Schroeder
Computational Network Theory: Theoretical Foundations and Applications 5, 280, 2015
32015
Transcriptome profiling of ST3GAL4 and FUT7 in multiple tumor types and prognostic value in adult acute myeloid leukemia
WE Fogler, V Deng, D Stewart, M Jarman, S Daminelli, A Carr, ...
Cancer Research 80 (16 Supplement), 5867-5867, 2020
2020
Association of tumor fusion burden with immune presence and androgen sensitivity in prostate cancer
M Wagle, K Yuen, EE Kadel, T Holcomb, S Srinivasan, J Castillo, ...
Cancer Research 79 (13 Supplement), 2149-2149, 2019
2019
P300/CBP inhibitor CCS1477 targets 22Rv1 prostate tumor AR and c-myc gene expression in vivo
P Elvin, N Pegg, S Daminelli, I Eden, B Young, A Prosser, J Worthington, ...
Cancer Research 79 (13 Supplement), 1019-1019, 2019
2019
Drug Repositioning with Incomplete Bi-cliques and Structural Bioinformatics
S Daminelli
2014
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