|Extensive variation in chromatin states across humans|
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
|Bacterial adaptation through distributed sensing of metabolic fluxes|
O Kotte, JB Zaugg, M Heinemann
Molecular systems biology 6 (1), 355, 2010
|Genetic control of chromatin states in humans involves local and distal chromosomal interactions|
F Grubert, JB Zaugg, M Kasowski, O Ursu, DV Spacek, AR Martin, ...
Cell 162 (5), 1051-1065, 2015
|Gene loops enhance transcriptional directionality|
SM Tan-Wong, JB Zaugg, J Camblong, Z Xu, DW Zhang, HE Mischo, ...
Science 338 (6107), 671-675, 2012
|Data-driven hypothesis weighting increases detection power in genome-scale multiple testing|
N Ignatiadis, B Klaus, JB Zaugg, W Huber
Nature methods 13 (7), 577-580, 2016
|A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast|
JB Zaugg, NM Luscombe
Genome research 22 (1), 84-94, 2012
|Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast|
M Castelnuovo, JB Zaugg, E Guffanti, A Maffioletti, J Camblong, Z Xu, ...
Nucleic acids research 42 (7), 4348-4362, 2014
|CTCF-mediated chromatin loops between promoter and gene body regulate alternative splicing across individuals|
M Ruiz-Velasco, M Kumar, MC Lai, P Bhat, AB Solis-Pinson, A Reyes, ...
Cell systems 5 (6), 628-637. e6, 2017
|N5-CAIR Mutase: Role of a CO2 Binding Site and Substrate Movement in Catalysis,|
AA Hoskins, M Morar, TJ Kappock, II Mathews, JB Zaugg, TE Barder, ...
Biochemistry 46 (10), 2842-2855, 2007
|Structure meets function: how chromatin organisation conveys functionality|
M Ruiz-Velasco, JB Zaugg
Current Opinion in Systems Biology 1, 129-136, 2017
|Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline|
ML Hennrich, N Romanov, P Horn, S Jaeger, V Eckstein, V Steeples, F Ye, ...
Nature communications 9 (1), 1-18, 2018
|TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells|
KD Rasmussen, I Berest, S Keβler, K Nishimura, L Simón-Carrasco, ...
Genome research 29 (4), 564-575, 2019
|Backmasking in the yeast genome: encoding overlapping information for protein-coding and RNA degradation|
SA Cakiroglu, JB Zaugg, NM Luscombe
Nucleic Acids Research 44 (17), 8065-8072, 2016
|Hepatic leukemia factor is a novel leukemic stem cell regulator in DNMT3A, NPM1, and FLT3-ITD triple-mutated AML|
S Garg, A Reyes-Palomares, L He, A Bergeron, VP Lavallée, S Lemieux, ...
Blood, The Journal of the American Society of Hematology 134 (3), 263-276, 2019
|Haplotype-specific MAPT exon 3 expression regulated by common intronic polymorphisms associated with Parkinsonian disorders|
MC Lai, AL Bechy, F Denk, E Collins, M Gavriliouk, JB Zaugg, BJ Ryan, ...
Molecular neurodegeneration 12 (1), 79, 2017
|Quantification of differential transcription factor activity and multiomics-based classification into activators and repressors: diffTF|
I Berest, C Arnold, A Reyes-Palomares, G Palla, KD Rasmussen, H Giles, ...
Cell Reports 29 (10), 3147-3159. e12, 2019
|Influence of the bleaching interval on the luminosity of long-term discolored enamel-dentin discs|
LK Zaugg, P Lenherr, JB Zaugg, R Weiger, G Krastl
Clinical oral investigations 20 (3), 451-458, 2016
|SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data|
C Arnold, P Bhat, JB Zaugg
Bioinformatics 32 (15), 2359-2360, 2016
|Genomic rewiring of SOX2 chromatin interaction network during differentiation of ESCs to postmitotic neurons|
D Bunina, N Abazova, N Diaz, KM Noh, J Krijgsveld, JB Zaugg
Cell systems, 2020
|Lysine 4 of histone H3. 3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy|
M Gehre, D Bunina, S Sidoli, MJ Lübke, N Diaz, M Trovato, BA Garcia, ...
Nature Genetics 52 (3), 273-282, 2020