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Jarno Mäkelä
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Year
Organization of the Escherichia coli chromosome by a MukBEF axial core
J Mäkelä, DJ Sherratt
Molecular Cell 78 (2), 250-260. e5, 2020
782020
Mytoe: automatic analysis of mitochondrial dynamics
E Lihavainen, J Mäkelä, JN Spelbrink, AS Ribeiro
Bioinformatics 28 (7), 1050-1051, 2012
672012
Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes
N Banaz*, J Mäkelä*, S Uphoff
Journal of physics D: Applied physics 52 (6), 064002, 2019
572019
Stochastic sequence-level model of coupled transcription and translation in prokaryotes
J Mäkelä, J Lloyd-Price, O Yli-Harja, AS Ribeiro
BMC bioinformatics 12, 1-13, 2011
452011
In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter
J Mäkelä, M Kandhavelu, SMD Oliveira, JG Chandraseelan, J Lloyd-Price, ...
Nucleic acids research 41 (13), 6544-6552, 2013
402013
Self-organised segregation of bacterial chromosomal origins
A Hofmann*, J Mäkelä*, DJ Sherratt, D Heermann, SM Murray
Elife 8, e46564, 2019
332019
Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli
SMD Oliveira, R Neeli‐Venkata, NSM Goncalves, JA Santinha, L Martins, ...
Molecular Microbiology 99 (4), 686-699, 2016
332016
SMC complexes organize the bacterial chromosome by lengthwise compaction
J Mäkelä, D Sherratt
Current genetics 66 (5), 895-899, 2020
222020
Dynamic architecture of the Escherichia coli structural maintenance of chromosomes (SMC) complex, MukBEF
KV Rajasekar, R Baker, GLM Fisher, JR Bolla, J Mäkelä, M Tang, ...
Nucleic acids research 47 (18), 9696-9707, 2019
212019
Rate-limiting steps in transcription dictate sensitivity to variability in cellular components
J Mäkelä, V Kandavalli, AS Ribeiro
Scientific Reports 7 (1), 10588, 2017
152017
Acyl carrier protein promotes MukBEF action in Escherichia coli chromosome organization-segregation
JP Prince, JR Bolla, GLM Fisher, J Mäkelä, M Fournier, CV Robinson, ...
Nature communications 12 (1), 6721, 2021
12*2021
Nonrandom segregation of sister chromosomes by Escherichia coli MukBEF
J Mäkelä, S Uphoff, DJ Sherratt
PNAS 118 (33), e2022078118, 2021
122021
Effects of codon sequence on the dynamics of genetic networks
I Potapov, J Mäkelä, O Yli-Harja, AS Ribeiro
Journal of theoretical biology 315, 17-25, 2012
112012
Competitive binding of MatP and topoisomerase IV to the MukB hinge domain
GLM Fisher, JR Bolla, KV Rajasekar, J Mäkelä, R Baker, M Zhou, ...
Elife 10, e70444, 2021
82021
ESTOOLS Data@ Hand: human stem cell gene expression resource
L Kong, KL Aho, K Granberg, R Lund, L Järvenpää, J Seppälä, P Gokhale, ...
Nature Methods 10 (9), 814-815, 2013
72013
Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli
J Mäkelä, H Huttunen, M Kandhavelu, O Yli-Harja, AS Ribeiro
Bioinformatics 27 (19), 2714-2720, 2011
72011
Dynamics of transcription of closely spaced promoters in Escherichia coli, one event at a time
L Martins*, J Mäkelä*, A Häkkinen, M Kandhavelu, O Yli-Harja, ...
Journal of theoretical biology 301, 83-94, 2012
62012
Genome concentration limits cell growth and modulates proteome composition in Escherichia coli
J Mäkelä, A Papagiannakis, WH Lin, MC Lanz, S Glenn, M Swaffer, ...
bioRxiv, 2024.02.26.582181, 2024
2024
Dynamics of bacterial operons during genome-wide stresses
R Jagadeesan, S Dash, C Palma, ISC Baptista, V Chauhan, J Makela, ...
bioRxiv, 2023.08. 24.554578, 2023
2023
Catching an invader
J Mäkelä, DJ Sherratt
Nature Reviews Microbiology 18 (4), 194-194, 2020
2020
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Articles 1–20