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Robert D. Clark
Robert D. Clark
Adjunct Prof. of Informatics, Indiana University (Bloomington
Verified email at indiana.edu - Homepage
Title
Cited by
Cited by
Year
Neighborhood behavior: a useful concept for validation of “molecular diversity” descriptors
DE Patterson, RD Cramer, AM Ferguson, RD Clark, LE Weinberger
Journal of medicinal chemistry 39 (16), 3049-3059, 1996
6341996
Consensus scoring for ligand/protein interactions
RD Clark, A Strizhev, JM Leonard, JF Blake, JB Matthew
Journal of Molecular Graphics and Modelling 20 (4), 281-295, 2002
5542002
A simplified method for the detection of neomycin phosphotransferase II activity in transformed plant tissues
RE McDonnell, RD Clark, WA Smith, MA Hinchee
Plant Molecular Biology Reporter 5, 380-386, 1987
2391987
GALAHAD: 1. Pharmacophore identification by hypermolecular alignment of ligands in 3D
NJ Richmond, CA Abrams, PRN Wolohan, E Abrahamian, P Willett, ...
Journal of computer-aided molecular design 20, 567-587, 2006
2362006
OptiSim: an extended dissimilarity selection method for finding diverse representative subsets
RD Clark
Journal of Chemical Information and Computer Sciences 37 (6), 1181-1188, 1997
2091997
Bioisosterism as a molecular diversity descriptor: Steric fields of single “topomeric” conformers
RD Cramer, RD Clark, DE Patterson, AM Ferguson
Journal of medicinal chemistry 39 (16), 3060-3069, 1996
1751996
Statistical variation in progressive scrambling
RD Clark, PC Fox
Journal of computer-aided molecular design 18 (7), 563-576, 2004
1592004
“Lead hopping”. Validation of topomer similarity as a superior predictor of similar biological activities
RD Cramer, RJ Jilek, S Guessregen, SJ Clark, B Wendt, RD Clark
Journal of medicinal chemistry 47 (27), 6777-6791, 2004
1412004
Virtual compound libraries: a new approach to decision making in molecular discovery research
RD Cramer, DE Patterson, RD Clark, F Soltanshahi, MS Lawless
Journal of chemical information and computer sciences 38 (6), 1010-1023, 1998
1271998
Managing bias in ROC curves
RD Clark, DJ Webster-Clark
Journal of computer-aided molecular design 22, 141-146, 2008
1232008
SYBYL line notation (SLN): a single notation to represent chemical structures, queries, reactions, and virtual libraries
RW Homer, J Swanson, RJ Jilek, T Hurst, RD Clark
Journal of chemical information and modeling 48 (12), 2294-2307, 2008
1152008
Association of ferredoxin-NADP+ oxidoreductase with the chloroplast cytochrome bf complex
RD Clark, MJ Hawkesford, SJ Coughlan, J Bennett, G Hind
FEBS letters 174 (1), 137-142, 1984
1111984
Improvement of quantitative structure–activity relationship (QSAR) tools for predicting Ames mutagenicity: outcomes of the Ames/QSAR International Challenge Project
M Honma, A Kitazawa, A Cayley, R Williams, C Barber, T Hanser, ...
Mutagenesis 34 (1), 3-16, 2019
1072019
Best of Both Worlds: Combining Pharma Data and State of the Art Modeling Technology To Improve in Silico pKa Prediction
R Fraczkiewicz, M Lobell, AH Göller, U Krenz, R Schoenneis, RD Clark, ...
Journal of chemical information and modeling 55 (2), 389-397, 2015
1032015
Predicting p K a by molecular tree structured fingerprints and PLS
L Xing, RC Glen, RD Clark
Journal of chemical information and computer sciences 43 (3), 870-879, 2003
952003
Alignment of three-dimensional molecules using an image recognition algorithm
NJ Richmond, P Willett, RD Clark
Journal of Molecular Graphics and Modelling 23 (2), 199-209, 2004
852004
Boosted leave-many-out cross-validation: the effect of training and test set diversity on PLS statistics
RD Clark
Journal of computer-aided molecular design 17, 265-275, 2003
742003
Characterization of the light-driven sodium pump of Halobacterium halobium. Consequences of sodium efflux as the primary light-driven event.
RE MacDonald, RV Greene, RD Clark, EV Lindley
Journal of Biological Chemistry 254 (23), 11831-11838, 1979
741979
Efficient generation, storage, and manipulation of fully flexible pharmacophore multiplets and their use in 3-D similarity searching
E Abrahamian, PC Fox, L Nćrum, IT Christensen, H Thřgersen, RD Clark
Journal of chemical information and computer sciences 43 (2), 458-468, 2003
702003
A marriage made in torsional space: using GALAHAD models to drive pharmacophore multiplet searches
JK Shepphird, RD Clark
Journal of computer-aided molecular design 20, 763-771, 2006
692006
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