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Dan Xie
Dan Xie
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Cited by
Year
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
4082013
Variation and genetic control of protein abundance in humans
L Wu, SI Candille, Y Choi, D Xie, L Jiang, J Li-Pook-Than, H Tang, ...
Nature 499 (7456), 79-82, 2013
3872013
Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species
D Xie, CC Chen, LM Ptaszek, S Xiao, X Cao, F Fang, HH Ng, HA Lewin, ...
Genome research 20 (6), 804-815, 2010
2522010
5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages
CX Song, S Yin, L Ma, A Wheeler, Y Chen, Y Zhang, B Liu, J Xiong, ...
Cell research 27 (10), 1231-1242, 2017
2412017
Whole-genome haplotyping using long reads and statistical methods
V Kuleshov, D Xie, R Chen, D Pushkarev, Z Ma, T Blauwkamp, M Kertesz, ...
Nature biotechnology 32 (3), 261-266, 2014
2232014
Comparative analysis of regulatory information and circuits across distant species
AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512 (7515), 453-456, 2014
2222014
Comparative Epigenomic Annotation of Regulatory DNA
S Xiao, D Xie, X Cao, P Yu, X Xing, CC Chen, M Musselman, M Xie, ...
Cell 149 (6), 1381-1392, 2012
2132012
LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST
D Xie, A Li, M Wang, Z Fan, H Feng
Nucleic acids research 33 (suppl_2), W105-W110, 2005
1992005
Dynamic trans-acting factor colocalization in human cells
D Xie, AP Boyle, L Wu, J Zhai, T Kawli, M Snyder
Cell 155 (3), 713-724, 2013
1562013
Regulatory analysis of the C. elegans genome with spatiotemporal resolution
CL Araya, T Kawli, A Kundaje, L Jiang, B Wu, D Vafeados, R Terrell, ...
Nature 512 (7515), 400-405, 2014
1202014
Longitudinal personal DNA methylome dynamics in a human with a chronic condition
R Chen, L Xia, K Tu, M Duan, K Kukurba, J Li-Pook-Than, D Xie, ...
Nature medicine 24 (12), 1930-1939, 2018
572018
Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
D Xie, J Cai, NY Chia, HH Ng, S Zhong
Genome Research 18 (8), 1325-1335, 2008
392008
Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells
J Cai, D Xie, Z Fan, H Chipperfield, J Marden, WH Wong, S Zhong
PLoS computational biology 6 (3), e1000707, 2010
382010
Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain
S Yin, K Lu, T Tan, J Tang, J Wei, X Liu, X Hu, H Wan, W Huang, Y Fan, ...
Nature communications 11 (1), 474, 2020
342020
Integrated epigenetic biomarkers in circulating cell-free DNA as a robust classifier for pancreatic cancer
F Cao, A Wei, X Hu, Y He, J Zhang, L Xia, K Tu, J Yuan, Z Guo, H Liu, ...
Clinical epigenetics 12, 1-14, 2020
322020
Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions
CC Chen, S Xiao, D Xie, X Cao, CX Song, T Wang, C He, S Zhong
PLoS computational biology 9 (12), e1003367, 2013
292013
Subtypes of schizophrenia identified by multi-omic measures associated with dysregulated immune function
C Luo, XN Pi, N Hu, X Wang, Y Xiao, S Li, JA Sweeney, JR Bishop, ...
Molecular psychiatry 26 (11), 6926-6936, 2021
282021
The open chromatin landscape of non–small cell lung carcinoma
Z Wang, K Tu, L Xia, K Luo, W Luo, J Tang, K Lu, X Hu, Y He, W Qiao, ...
Cancer research 79 (19), 4840-4854, 2019
242019
Dissecting early differentially expressed genes in a mixture of differentiating embryonic stem cells
F Hong, F Fang, X He, X Cao, H Chipperfield, D Xie, WH Wong, HH Ng, ...
PLoS computational biology 5 (12), e1000607, 2009
242009
Liquid biopsy by combining 5-hydroxymethylcytosine signatures of plasma cell-free DNA and protein biomarkers for diagnosis and prognosis of hepatocellular carcinoma
Z Cai, J Zhang, Y He, L Xia, X Dong, G Chen, Y Zhou, X Hu, S Zhong, ...
ESMO open 6 (1), 100021, 2021
172021
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