BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ... Systematic biology 61 (1), 170-173, 2012 | 660 | 2012 |
Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia S Takala-Harrison, CG Jacob, C Arze, MP Cummings, JC Silva, ... The Journal of infectious diseases 211 (5), 670-679, 2015 | 447 | 2015 |
Copia-like retrotransposons are ubiquitous among plants. DF Voytas, MP Cummings, A Koniczny, FM Ausubel, SR Rodermel Proceedings of the National Academy of Sciences 89 (15), 7124-7128, 1992 | 424 | 1992 |
Sampling properties of DNA sequence data in phylogenetic analysis. MP Cummings, SP Otto, J Wakeley Molecular Biology and Evolution 12 (5), 814-822, 1995 | 419 | 1995 |
Comparing bootstrap and posterior probability values in the four-taxon case MP Cummings, SA Handley, DS Myers, DL Reed, A Rokas, K Winka Systematic biology 52 (4), 477-487, 2003 | 350 | 2003 |
Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia S Takala-Harrison, TG Clark, CG Jacob, MP Cummings, O Miotto, ... Proceedings of the National Academy of Sciences 110 (1), 240-245, 2013 | 335 | 2013 |
A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies) JC Regier, C Mitter, A Zwick, AL Bazinet, MP Cummings, AY Kawahara, ... PloS one 8 (3), e58568, 2013 | 333 | 2013 |
Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study JC Regier, A Zwick, MP Cummings, AY Kawahara, S Cho, S Weller, ... BMC Evolutionary Biology 9, 1-21, 2009 | 309 | 2009 |
A genealogical approach to quantifying lineage divergence MP Cummings, MC Neel, KL Shaw Evolution 62 (9), 2411-2422, 2008 | 270 | 2008 |
A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0 AL Bazinet, DJ Zwickl, MP Cummings Systematic biology 63 (5), 812-818, 2014 | 238 | 2014 |
Phylogeny and evolution of Lepidoptera C Mitter, DR Davis, MP Cummings Annual Review of Entomology 62, 265-283, 2017 | 233 | 2017 |
Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence JC Regier, JW Shultz, ARD Ganley, A Hussey, D Shi, B Ball, A Zwick, ... Systematic biology 57 (6), 920-938, 2008 | 228 | 2008 |
Extreme polymorphism in a vaccine antigen and risk of clinical malaria: implications for vaccine development SL Takala, D Coulibaly, MA Thera, AH Batchelor, MP Cummings, ... Science translational medicine 1 (2), 2ra5-2ra5, 2009 | 216 | 2009 |
A superfamily of Arabidopsis thaliana retrotransposons. A Konieczny, DF Voytas, MP Cummings, FM Ausubel Genetics 127 (4), 801-809, 1991 | 203 | 1991 |
The evolution of plant nuclear genes MT Clegg, MP Cummings, ML Durbin Proceedings of the National Academy of Sciences 94 (15), 7791-7798, 1997 | 188 | 1997 |
A molecular phylogeny for the pyraloid moths (Lepidoptera: Pyraloidea) and its implications for higher‐level classification JC Regier, C Mitter, MA Solis, JE Hayden, B Landry, M Nuss, ... Systematic Entomology 37 (4), 635-656, 2012 | 175 | 2012 |
Biased data reduce efficiency and effectiveness of conservation reserve networks J Grand, MP Cummings, TG Rebelo, TH Ricketts, MC Neel Ecology Letters 10 (5), 364-374, 2007 | 163 | 2007 |
BEAGLE 3: improved performance, scaling, and usability for a high-performance computing library for statistical phylogenetics DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ... Systematic biology 68 (6), 1052-1061, 2019 | 161 | 2019 |
Phylogenetic relationships of Acanthocephala based on analysis of 18S ribosomal RNA gene sequences M García-Varela, G Pérez-Ponce de León, P de la Torre, MP Cummings, ... Journal of Molecular Evolution 50, 532-540, 2000 | 151 | 2000 |
A comparative evaluation of sequence classification programs AL Bazinet, MP Cummings BMC bioinformatics 13, 1-13, 2012 | 144 | 2012 |