Joseph P. Dunham
Joseph P. Dunham
University of Southern California | SeqOnce Biosciences, Inc.
Verified email at usc.edu
Title
Cited by
Cited by
Year
Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
MR Miller, JP Dunham, A Amores, WA Cresko, EA Johnson
Genome research 17 (2), 240-248, 2007
8932007
Genome-wide analysis of a long-term evolution experiment with Drosophila
MK Burke, JP Dunham, P Shahrestani, KR Thornton, MR Rose, AD Long
Nature 467 (7315), 587-590, 2010
3932010
Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing
PL Chang, JP Dunham, SV Nuzhdin, MN Arbeitman
BMC genomics 12 (1), 364, 2011
732011
A de novo transcriptome assembly of Lucilia sericata (Diptera: Calliphoridae) with predicted alternative splices, single nucleotide polymorphisms and transcript …
SH Sze, JP Dunham, B Carey, PL Chang, F Li, RM Edman, C Fjeldsted, ...
Insect molecular biology 21 (2), 205-221, 2012
592012
Zucchini yellow mosaic virus (ZYMV, Potyvirus): vertical transmission, seed infection and cryptic infections
HE Simmons, JP Dunham, KE Zinn, GP Munkvold, EC Holmes, ...
Virus research 176 (1-2), 259-264, 2013
472013
High nucleotide divergence in developmental regulatory genes contrasts with the structural elements of olfactory pathways in Caenorhabditis
R Jovelin, JP Dunham, FS Sung, PC Phillips
Genetics 181 (4), 1387-1397, 2009
442009
Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium
SS Porter, PL Chang, CA Conow, JP Dunham, ML Friesen
The ISME journal 11 (1), 248-262, 2017
422017
Deep sequencing reveals persistence of intra-and inter-host genetic diversity in natural and greenhouse populations of zucchini yellow mosaic virus
HE Simmons, JP Dunham, JC Stack, BJA Dickins, I Pagan, EC Holmes, ...
Journal of general virology 93 (8), 1831-1840, 2012
362012
A cost-effective method for high-throughput construction of illumina sequencing libraries
JP Dunham, ML Friesen
Cold Spring Harbor Protocols 2013 (9), pdb. prot074187, 2013
332013
Analysis of viral (zucchini yellow mosaic virus) genetic diversity during systemic movement through a Cucurbita pepo vine
JP Dunham, HE Simmons, EC Holmes, AG Stephenson
Virus research 191, 172-179, 2014
232014
Widespread selection across coding and noncoding DNA in the pea aphid genome
RD Bickel, JP Dunham, JA Brisson
G3: Genes, Genomes, Genetics 3 (6), 993-1001, 2013
132013
Transgenic Virus Resistance in Crop-Wild Cucurbita pepo Does Not Prevent Vertical Transmission of Zucchini yellow mosaic virus
HE Simmons, HR Prendeville, JP Dunham, MJ Ferrari, JD Earnest, ...
Plant disease 99 (11), 1616-1621, 2015
52015
The draft genome of Ruditapes philippinarum (the Manila clam), a promising model system for mitochondrial biology
F Ghiselli, A Komissarov, L Milani, JP Dunham, S Breton, SV Nuzhdin, ...
PeerJ PrePrints, 2017
32017
Elucidation of the genome of Bradyrhizobium sp. strain USDA 3456, a historic agricultural diazotroph from cowpea (Vigna unguiculata)
RA White, JS Norman, EE Mclachlan, JP Dunham, A Garoutte, ML Friesen
Microbiology Resource Announcements 8 (33), e00812-19, 2019
12019
Rapid library construction for high throughput sequencing
J Dunham
US Patent App. 16/631,321, 2020
2020
Method to generate biocompatible dendritic polymers for analyte detection with multimodal labeling and signal amplification
SE Fraser, S Restrepo, JP Dunham
US Patent App. 16/606,038, 2020
2020
Somatic drift and rapid loss of heterozygosity suggest small effective population size of stem cells and high somatic mutation rate in asexual planaria
H Asgharian, J Dunham, P Marjoram, SV Nuzhdin
bioRxiv, 665166, 2020
2020
Unraveling the draft genome sequence of Paenibacillus sp. tmac-D7 a non-rhizobial endophyte from Trifolium macraei located in Bodega Bay, California
RA White III, EE Mclachlan, JP Dunham, A Garoutte, ML Friesen
Preprints, 2019
2019
Elucidation of the draft genome sequence of Ideonella azotifigens DSMZ21438 a novel aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil
RA White III, JS Norman, EE Mclachlan, JP Dunham, A Garoutte, ...
Preprints, 2019
2019
Revealing the Draft Genome Sequence of Bradyrhizobium sp. Strain USDA 3458, an Effective Symbiotic Diazotroph Isolated from Cowpea (Vigna unguiculata) Genotype IT82E-16
RA White, JS Norman, EE Mclachlan, JP Dunham, A Garoutte, ML Friesen
Microbiology resource announcements 8 (38), e00813-19, 2019
2019
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