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Erik Sonnhammer
Erik Sonnhammer
Professor of Bioinformatics, DBB Stockholm University, Science for Life Laboratory
Verified email at scilifelab.se - Homepage
Title
Cited by
Cited by
Year
Pfam: the protein families database
RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ...
Nucleic acids research 42 (D1), D222-D230, 2014
16201*2014
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
A Krogh, B Larsson, G Von Heijne, ELL Sonnhammer
Journal of molecular biology 305 (3), 567-580, 2001
138502001
The Pfam protein families database in 2019
S El-Gebali, J Mistry, A Bateman, SR Eddy, A Luciani, SC Potter, ...
Nucleic acids research 47 (D1), D427-D432, 2019
42412019
The Pfam protein families database
A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ...
Nucleic acids research 32 (suppl_1), D138-D141, 2004
41612004
Pfam: The protein families database in 2021
J Mistry, S Chuguransky, L Williams, M Qureshi, GA Salazar, ...
Nucleic acids research 49 (D1), D412-D419, 2021
33522021
A hidden Markov model for predicting transmembrane helices in protein sequences.
ELL Sonnhammer, G Von Heijne, A Krogh
Ismb 6, 175-182, 1998
32571998
The Pfam protein families database
A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ...
Nucleic acids research 30 (1), 276-280, 2002
26932002
Pfam: clans, web tools and services
RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ...
Nucleic acids research 34 (suppl_1), D247-D251, 2006
26502006
A combined transmembrane topology and signal peptide prediction method
L Käll, A Krogh, ELL Sonnhammer
Journal of molecular biology 338 (5), 1027-1036, 2004
25572004
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans
R Wilson, R Ainscough, K Anderson, C Baynes, M Berks, J Bonfield, ...
Nature 368 (6466), 32-38, 1994
18421994
Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server
L Käll, A Krogh, ELL Sonnhammer
Nucleic acids research 35 (suppl_2), W429-W432, 2007
16872007
The Pfam protein families database
A Bateman, E Birney, R Durbin, SR Eddy, KL Howe, ELL Sonnhammer
Nucleic acids research 28 (1), 263-266, 2000
15812000
Pfam: a comprehensive database of protein domain families based on seed alignments
ELL Sonnhammer, SR Eddy, R Durbin
Proteins: Structure, Function, and Bioinformatics 28 (3), 405-420, 1997
15531997
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
M Remm, CEV Storm, ELL Sonnhammer
Journal of molecular biology 314 (5), 1041-1052, 2001
15202001
Pfam: multiple sequence alignments and HMM-profiles of protein domains
ELL Sonnhammer, SR Eddy, E Birney, A Bateman, R Durbin
Nucleic acids research 26 (1), 320-322, 1998
9591998
Inparanoid: a comprehensive database of eukaryotic orthologs
KP O'brien, M Remm, ELL Sonnhammer
Nucleic acids research 33 (suppl_1), D476-D480, 2005
8862005
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
ELL Sonnhammer, R Durbin
Gene 167 (1-2), GC1-GC10, 1995
8671995
Kalign–an accurate and fast multiple sequence alignment algorithm
T Lassmann, ELL Sonnhammer
BMC bioinformatics 6, 1-9, 2005
8562005
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
G Östlund, T Schmitt, K Forslund, T Köstler, DN Messina, S Roopra, ...
Nucleic acids research 38 (suppl_1), D196-D203, 2010
7082010
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
A Bateman, E Birney, R Durbin, SR Eddy, RD Finn, ELL Sonnhammer
Nucleic acids research 27 (1), 260-262, 1999
6901999
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