| Stratification and enumeration of boolean functions by canalizing depth Q He, M Macauley Physica D: Nonlinear Phenomena 314, 1-8, 2016 | 24 | 2016 |
| Multiscale feedback loops in SARS-CoV-2 viral evolution C Barrett, AC Bura, Q He, FW Huang, TJX Li, MS Waterman, CM Reidys Journal of Computational Biology 28 (3), 248-256, 2021 | 9 | 2021 |
| Small Gröbner fans of ideals of points E Dimitrova, Q He, L Robbiano, B Stigler Journal of Algebra and Its Applications 19 (05), 2050087, 2020 | 9 | 2020 |
| Weighted homology of bi-structures over certain discrete valuation rings A Bura, Q He, C Reidys Mathematics 9 (7), 744, 2021 | 7 | 2021 |
| Geometric characterization of data sets with unique reduced Gröbner bases Q He, ES Dimitrova, B Stigler, A Zhang Bulletin of Mathematical Biology 81, 2691-2705, 2019 | 7 | 2019 |
| An efficient dual sampling algorithm with hamming distance filtration C Barrett, Q He, FW Huang, CM Reidys Journal of Computational Biology 25 (11), 1179-1192, 2018 | 7 | 2018 |
| Loop homology of bi-secondary structures AC Bura, Q He, CM Reidys Discrete Mathematics 344 (6), 112371, 2021 | 6 | 2021 |
| Dynamics of complex boolean networks: Canalization, stability, and criticality Q He, M Macauley, R Davies Algebraic and Discrete Mathematical Methods for Modern Biology, 93-119, 2015 | 6 | 2015 |
| Loop homology of bi-secondary structures II AC Bura, Q He, CM Reidys Journal of Algebraic Combinatorics 56 (3), 785-798, 2022 | 5 | 2022 |
| Algebraic geometry arising from discrete models of gene regulatory networks Q He Clemson University, 2016 | 5 | 2016 |
| Genetic robustness of let-7 miRNA sequence–structure pairs Q He, FW Huang, C Barrett, CM Reidys RNA 25 (12), 1592-1603, 2019 | 3 | 2019 |
| A Boltzmann sampler for 1-pairs with double filtration C Barrett, Q He, FW Huang, CM Reidys Journal of Computational Biology 26 (3), 173-192, 2019 | 2 | 2019 |
| Geometric combinatorics and computational molecular biology: Branching polytopes for RNA sequences E Drellich, A Gainer-Dewar, H Harrington, Q He, CE Heitsch, ... Algebraic and Geometric Methods in Applied Discrete Mathematics; Harrington …, 2017 | 2 | 2017 |
| RNA secondary structures: combinatorial models and folding algorithms Q He, M Macauley, R Davies Algebraic and Discrete Mathematical Methods for Modern Biology, 321-345, 2015 | 2 | 2015 |
| An efficient dual sampling algorithm with Hamming distance filtration FW Huang, Q He, C Barrett, CM Reidys arXiv preprint arXiv:1711.10549, 2017 | 1 | 2017 |
| Geometric combinatorics and computational molecular biology: Branching polytopes for RNA sequences H Harrington, E Drellich, A Gainer-Dewar, Q He, C Heitsch, S Poznanovic American Mathematical Society, 2017 | 1 | 2017 |
| Motifs in SARS-CoV-2 evolution C Barrett, AC Bura, Q He, FW Huang, TJX Li, CM Reidys RNA 30 (1), 1-15, 2024 | | 2024 |
| The arithmetic topology of genetic alignments C Barrett, A Bura, Q He, F Huang, C Reidys Journal of Mathematical Biology 86 (3), 34, 2023 | | 2023 |
| Buying time: detecting Vocs in SARS-CoV-2 via co-evolutionary signals C Barrett, AC Bura, Q He, FW Huang, TJX Li, CM Reidys bioRxiv, 2022.07. 21.500897, 2022 | | 2022 |
| Systems And Methods For Characterizing And Sampling Nucleic Acid Sequences And Structures Of Same CL Barrett, C Reidys, Q He, W Huang US Patent App. 16/158,964, 2019 | | 2019 |
