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Tomáš Kubař
Tomáš Kubař
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Titel
Zitiert von
Zitiert von
Jahr
DFTB+, a software package for efficient approximate density functional theory based atomistic simulations
B Hourahine, B Aradi, V Blum, F Bonafé, A Buccheri, C Camacho, ...
The Journal of Chemical Physics 152 (12), 124101, 2020
7472020
Semiempirical quantum mechanical methods for noncovalent interactions for chemical and biochemical applications
AS Christensen, T Kubař, Q Cui, M Elstner
Chemical Reviews 116 (9), 5301-5337, 2016
4232016
Parameterization of the DFTB3 method for Br, Ca, Cl, F, I, K, and Na in organic and biological systems
M Kubillus, T Kubař, M Gaus, J Řezáč, M Elstner
Journal of chemical theory and computation 11 (1), 332-342, 2014
2552014
Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution. Guanine: surprising stabilization …
M Hanus, F Ryjáček, M Kabeláč, T Kubař, TV Bogdan, SA Trygubenko, ...
Journal of the American Chemical Society 125 (25), 7678-7688, 2003
2232003
Efficient calculation of charge-transfer matrix elements for hole transfer in DNA
T Kubař, PB Woiczikowski, G Cuniberti, M Elstner
The Journal of Physical Chemistry B 112 (26), 7937-7947, 2008
1932008
What governs the charge transfer in DNA? The role of DNA conformation and environment
T Kubař, M Elstner
The Journal of Physical Chemistry B 112 (29), 8788-8798, 2008
1602008
Coarse-grained time-dependent density functional simulation of charge transfer in complex systems: application to hole transfer in DNA
T Kubař, M Elstner
The Journal of Physical Chemistry B 114 (34), 11221-11240, 2010
1062010
Charge transport through biomolecular wires in a solvent: bridging molecular dynamics and model Hamiltonian approaches
R Gutierrez, RA Caetano, BP Woiczikowski, T Kubar, M Elstner, ...
Physical review letters 102 (20), 208102, 2009
1022009
Solvent Fluctuations Drive the Hole Transfer in DNA: A Mixed Quantum− Classical Study
T Kubař, U Kleinekathöfer, M Elstner
The Journal of Physical Chemistry B 113 (39), 13107-13117, 2009
1002009
A hybrid approach to simulation of electron transfer in complex molecular systems
T Kubař, M Elstner
Journal of The Royal Society Interface 10 (87), 20130415, 2013
992013
Nonadiabatic QM/MM simulations of fast charge transfer in Escherichia coli DNA photolyase
PB Woiczikowski, T Steinbrecher, T Kubař, M Elstner
The Journal of Physical Chemistry B 115 (32), 9846-9863, 2011
992011
Combined density functional theory and Landauer approach for hole transfer in DNA along classical molecular dynamics trajectories
PB Woiczikowski, T Kubař, R Gutiérrez, RA Caetano, G Cuniberti, ...
The Journal of chemical physics 130 (21), 06B608, 2009
982009
Binding of cationic and neutral phenanthridine intercalators to a DNA oligomer is controlled by dispersion energy: quantum chemical calculations and molecular mechanics simulations
T Kubař, M Hanus, F Ryjáček, P Hobza
Chemistry–A European Journal 12 (1), 280-290, 2006
982006
Solvent driving force ensures fast formation of a persistent and well-separated radical pair in plant cryptochrome
G Lüdemann, IA Solov’yov, T Kubař, M Elstner
Journal of the American Chemical Society 137 (3), 1147-1156, 2015
832015
Efficient algorithms for the simulation of non-adiabatic electron transfer in complex molecular systems: application to DNA
T Kubař, M Elstner
Physical Chemistry Chemical Physics 15 (16), 5794-5813, 2013
772013
Structural fluctuations and quantum transport through DNA molecular wires: a combined molecular dynamics and model Hamiltonian approach
R Gutiérrez, R Caetano, PB Woiczikowski, T Kubar, M Elstner, G Cuniberti
New Journal of Physics 12 (2), 023022, 2010
752010
Size-consistent multipartitioning QM/MM: a stable and efficient adaptive QM/MM method
HC Watanabe, T Kubař, M Elstner
Journal of chemical theory and computation 10 (10), 4242-4252, 2014
722014
Multi-Scale Approach to Non-Adiabatic Charge Transport in High-Mobility Organic Semiconductors
A Heck, JJ Kranz, T Kubař, M Elstner
Journal of chemical theory and computation 11 (11), 5068-5082, 2015
712015
Structural stability versus conformational sampling in biomolecular systems: Why is the charge transfer efficiency in G4-DNA better than in double-stranded DNA?
PB Woiczikowski, T Kubař, R Gutiérrez, G Cuniberti, M Elstner
The Journal of chemical physics 133 (3), 07B606, 2010
662010
Parametrization of the SCC-DFTB Method for Halogens
T Kubař, Z Bodrog, M Gaus, C Köhler, B Aradi, T Frauenheim, M Elstner
Journal of Chemical Theory and Computation 9 (7), 2939-2949, 2013
652013
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