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Veronika Vonstein
Veronika Vonstein
Fellowship for Interpretation of Genomes
Verified email at theFIG.info
Title
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Cited by
Year
The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ...
BMC genomics 9 (1), 1-15, 2008
100642008
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ...
Nucleic acids research 42 (D1), D206-D214, 2014
35802014
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
21172005
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
16072015
PATRIC, the bacterial bioinformatics database and analysis resource
AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ...
Nucleic acids research 42 (D1), D581-D591, 2014
11612014
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
11512017
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
4642020
Characterization of the Staphylococcus aureus Heat Shock, Cold Shock, Stringent, and SOS Responses and Their Effects on Log-Phase mRNA Turnover
KL Anderson, C Roberts, T Disz, V Vonstein, K Hwang, R Overbeek, ...
Journal of bacteriology 188 (19), 6739-6756, 2006
3082006
The ERGO TM genome analysis and discovery system
R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ...
Nucleic acids research 31 (1), 164-171, 2003
2772003
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
1852012
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED
S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry
Systems Metabolic Engineering, 17-45, 2013
1412013
Accessing the SEED genome databases via Web services API: tools for programmers
T Disz, S Akhter, D Cuevas, R Olson, R Overbeek, V Vonstein, R Stevens, ...
BMC bioinformatics 11 (1), 1-11, 2010
1262010
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ...
Nucleic acids research 35 (suppl_1), D347-D353, 2007
1142007
Archaeal shikimate kinase, a new member of the GHMP-kinase family
M Daugherty, V Vonstein, R Overbeek, A Osterman
Journal of Bacteriology 183 (1), 292-300, 2001
1122001
PATtyFams: protein families for the microbial genomes in the PATRIC database
JJ Davis, S Gerdes, GJ Olsen, R Olson, GD Pusch, M Shukla, V Vonstein, ...
Frontiers in microbiology 7, 118, 2016
942016
Functional analysis of gapped microbial genomes: Amino acid metabolism of Thiobacillus ferrooxidans
E Selkov, R Overbeek, Y Kogan, L Chu, V Vonstein, D Holmes, S Silver, ...
Proceedings of the National Academy of Sciences 97 (7), 3509-3514, 2000
782000
Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center
AR Wattam, T Brettin, JJ Davis, S Gerdes, R Kenyon, D Machi, C Mao, ...
Comparative Genomics, 79-101, 2018
712018
PATRIC as a unique resource for studying antimicrobial resistance
DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ...
Briefings in bioinformatics 20 (4), 1094-1102, 2019
682019
Annotation of bacterial and archaeal genomes: improving accuracy and consistency
R Overbeek, D Bartels, V Vonstein, F Meyer
Chemical reviews 107 (8), 3431-3447, 2007
652007
Real Time Metagenomics: Using k-mers to annotate metagenomes
RA Edwards, R Olson, T Disz, GD Pusch, V Vonstein, R Stevens, ...
Bioinformatics 28 (24), 3316-3317, 2012
632012
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