| PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin, B Göttgens, ... Genome biology 20, 1-9, 2019 | 1276 | 2019 |
| Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics M Plass, J Solana, FA Wolf, S Ayoub, A Misios, P Glažar, B Obermayer, ... Science 360 (6391), eaaq1723, 2018 | 478 | 2018 |
| Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells P Önal, D Grün, C Adamidi, A Rybak, J Solana, G Mastrobuoni, Y Wang, ... The EMBO journal 31 (12), 2755-2769, 2012 | 184 | 2012 |
| Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNA-seq, RNA interference and irradiation approach J Solana, D Kao, Y Mihaylova, F Jaber-Hijazi, S Malla, R Wilson, ... Genome biology 13, 1-23, 2012 | 175 | 2012 |
| Closing the circle of germline and stem cells: the Primordial Stem Cell hypothesis J Solana EvoDevo 4, 1-17, 2013 | 114 | 2013 |
| Spoltud-1 is a chromatoid body component required for planarian long-term stem cell self-renewal J Solana, P Lasko, R Romero Developmental biology 328 (2), 410-421, 2009 | 99 | 2009 |
| Gö ttgens, B., Rajewsky, N., Simon, L., and Theis, FJ (2019). PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of … FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin Genome Biol 20 (59), 100-11, 0 | 81 | |
| ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics H García-Castro, NJ Kenny, M Iglesias, P Álvarez-Campos, V Mason, ... Genome biology 22, 1-34, 2021 | 72 | 2021 |
| Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians J Solana, M Irimia, S Ayoub, MR Orejuela, V Zywitza, M Jens, J Tapial, ... Elife 5, e16797, 2016 | 59 | 2016 |
| Planarian MBD2/3 is required for adult stem cell pluripotency independently of DNA methylation F Jaber-Hijazi, PJKP Lo, Y Mihaylova, JM Foster, JS Benner, BT Romero, ... Developmental biology 384 (1), 141-153, 2013 | 37 | 2013 |
| An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression A Cardona, J Fernández, J Solana, R Romero Development genes and evolution 215, 482-488, 2005 | 36 | 2005 |
| The CCR4-NOT complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation J Solana, C Gamberi, Y Mihaylova, S Grosswendt, C Chen, P Lasko, ... PLoS Genetics 9 (12), e1004003, 2013 | 33 | 2013 |
| SpolvlgA is a DDX3/PL10-related DEAD-box RNA helicase expressed in blastomeres and embryonic cells in planarian embryonic development J Solana, R Romero International journal of biological sciences 5 (1), 64, 2009 | 28 | 2009 |
| The Integrator complex regulates differential snRNA processing and fate of adult stem cells in the highly regenerative planarian Schmidtea mediterranea D Schmidt, H Reuter, K Hüttner, L Ruhe, F Rabert, F Seebeck, M Irimia, ... PLoS genetics 14 (12), e1007828, 2018 | 22 | 2018 |
| Post-transcriptional regulation in planarian stem cells S Krishna, D Palakodeti, J Solana Seminars in Cell & Developmental Biology 87, 69-78, 2019 | 19 | 2019 |
| Annelid adult cell type diversity and their pluripotent cellular origins P Álvarez-Campos, H García-Castro, E Emili, A Pérez-Posada, I Del Olmo, ... Nature Communications 15 (1), 3194, 2024 | 17 | 2024 |
| An atlas of spider development at single-cell resolution provides new insights into arthropod embryogenesis DJ Leite, A Schönauer, G Blakeley, A Harper, H Garcia-Castro, ... EvoDevo 15 (1), 5, 2024 | 16 | 2024 |
| Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells. bioRxiv FA Wolf, F Hamey, M Plass, J Solana, JS Dahlin, B Gottgens, N Rajewsky, ... October, 2017 | 16* | 2017 |
| Single-cell transcriptomics in planaria: new tools allow new insights into cellular and evolutionary features H García-Castro, J Solana Biochemical Society Transactions 50 (5), 1237-1246, 2022 | 7 | 2022 |
| RNA in situ hybridization on planarian paraffin sections J Solana Planarian Regeneration: Methods and Protocols, 393-404, 2018 | 7 | 2018 |
