| PrognoScan: a new database for meta-analysis of the prognostic value of genes H Mizuno, K Kitada, K Nakai, A Sarai BMC medical genomics 2, 1-11, 2009 | 879 | 2009 |
| Identification of Genes Upregulated in ALK-Positive and EGFR/KRAS/ALK-Negative Lung Adenocarcinomas H Okayama, T Kohno, Y Ishii, Y Shimada, K Shiraishi, R Iwakawa, ... Cancer research 72 (1), 100-111, 2012 | 774 | 2012 |
| Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices K Ogata, S Morikawa, H Nakamura, A Sekikawa, T Inoue, H Kanai, ... Cell 79 (4), 639-648, 1994 | 618 | 1994 |
| Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant D Hao, M Ohme-Takagi, A Sarai Journal of Biological Chemistry 273 (41), 26857-26861, 1998 | 519 | 1998 |
| ProTherm and ProNIT: thermodynamic databases for proteins and protein–nucleic acid interactions MDS Kumar, KA Bava, MM Gromiha, P Prabakaran, K Kitajima, H Uedaira, ... Nucleic acids research 34 (suppl_1), D204-D206, 2006 | 468 | 2006 |
| ProTherm, version 4.0: thermodynamic database for proteins and mutants KA Bava, MM Gromiha, H Uedaira, K Kitajima, A Sarai Nucleic acids research 32 (suppl_1), D120-D121, 2004 | 421 | 2004 |
| Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information S Ahmad, MM Gromiha, A Sarai Bioinformatics 20 (4), 477-486, 2004 | 412 | 2004 |
| The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation K Ogata, C Kanei-Ishii, M Sasaki, H Hatanaka, A Nagadoi, M Enari, ... Nature structural biology 3 (2), 178-187, 1996 | 347 | 1996 |
| Solution structure of a DNA-binding unit of Myb: a helix-turn-helix-related motif with conserved tryptophans forming a hydrophobic core. K Ogata, H Hojo, S Aimoto, T Nakai, H Nakamura, A Sarai, S Ishii, ... Proceedings of the National Academy of Sciences 89 (14), 6428-6432, 1992 | 329 | 1992 |
| PSSM-based prediction of DNA binding sites in proteins S Ahmad, A Sarai BMC bioinformatics 6, 1-6, 2005 | 314 | 2005 |
| ASAView: Database and tool for solvent accessibility representation in proteins S Ahmad, M Gromiha, H Fawareh, A Sarai BMC bioinformatics 5, 1-5, 2004 | 306 | 2004 |
| Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins MM Gromiha, M Oobatake, A Sarai Biophysical chemistry 82 (1), 51-67, 1999 | 270 | 1999 |
| Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments. Y Takeda, A Sarai, VM Rivera Proceedings of the National Academy of Sciences 86 (2), 439-443, 1989 | 248 | 1989 |
| Real value prediction of solvent accessibility from amino acid sequence S Ahmad, MM Gromiha, A Sarai Proteins: Structure, Function, and Bioinformatics 50 (4), 629-635, 2003 | 235 | 2003 |
| Structure‐based prediction of DNA target sites by regulatory proteins H Kono, A Sarai Proteins: Structure, Function, and Bioinformatics 35 (1), 114-131, 1999 | 232 | 1999 |
| Comparison of the free and DNA-complexed forms of the DMA-binding domain from c-Myb K Ogata, S Morikawa, H Nakamura, H Hojo, S Yoshimura, R Zhang, ... Nature structural biology 2 (4), 309-320, 1995 | 229 | 1995 |
| Protein-DNA recognition patterns and predictions A Sarai, H Kono Annu. Rev. Biophys. Biomol. Struct. 34, 379-398, 2005 | 224 | 2005 |
| Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically. A Sarai, Y Takeda Proceedings of the National Academy of Sciences 86 (17), 6513-6517, 1989 | 206 | 1989 |
| Recognition of specific DNA sequences by the c-myb protooncogene product: role of three repeat units in the DNA-binding domain. J Tanikawa, T Yasukawa, M Enari, K Ogata, Y Nishimura, S Ishii, A Sarai Proceedings of the National Academy of Sciences 90 (20), 9320-9324, 1993 | 194 | 1993 |
| Sequence dependence of DNA conformational flexibility A Sarai, J Mazur, R Nussinov, RL Jernigan Biochemistry 28 (19), 7842-7849, 1989 | 181 | 1989 |
