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Peter Amstutz
Peter Amstutz
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Year
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
9752017
Common workflow language, v1. 0
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
figshare, 2016
1872016
Methods included: standardizing computational reuse and portability with the common workflow language
MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ...
Communications of the ACM 65 (6), 54-63, 2022
1012022
Taking topic detection from evaluation to practice
J Allan, S Harding, D Fisher, A Bolivar, S Guzman-Lara, P Amstutz
Proceedings of the 38th Annual Hawaii International Conference on System …, 2005
952005
Common workflow language
P Amstutz, MR Crusoe, N Tijanic, B Chapman, J Chilton, M Heuer, ...
V1. 0 UK: Figshare, 2016
302016
Real time visualization of robot state with mobile virtual reality
P Amstutz, AH Fagg
Proceedings 2002 IEEE International Conference on Robotics and Automation …, 2002
282002
Common Workflow Language, v1. 0; 2016
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
DOI 10, m9, 2019
262019
Rapid and efficient analysis of 20,000 RNA-seq samples with Toil
J Vivian, A Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
bioRxiv, 062497, 2016
262016
Maya Nedeljkovich, et al. 2016
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
Common workflow language, v1. 0, 2016
212016
Common workflow language, v1. 0. figshare
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
Common workflow language v1. 0. figshare, 2016
202016
Existing workflow systems.
P Amstutz
(No Title), 2021
172021
Common Workflow Language, v1. 0. Specification, Common Workflow Language working group
P Amstutz, M Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
Peter Amstutz MRC, Nebojša Tijanic, editor, 2016
152016
Common Workflow Language, v1. 0. figshare 2016
P Amstutz, MR Crusoe, N Tijanic, B Chapman, J Chilton, M Heuer, ...
Publisher Full Text, 0
12
Common workflow language, v1. 0
B Chapman, J Chilton, M Heuer, A Kartashov, D Leehr, H Ménager, ...
Specification, common workflow language working group. Amstutz P, Crusoe MR …, 2016
92016
Common workflow language, draft 3
P Amstutz, R Andeer, B Chapman, J Chilton, MR Crusoe, R Valls Guimera, ...
92016
Common workflow language, v1. 0. specification
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
Common Workflow Language working group, 2016
92016
BioHackathon 2015: Semantics of data for life sciences and reproducible research
RA Vos, T Katayama, H Mishima, S Kawano, S Kawashima, JD Kim, ...
F1000Research 9, 2020
82020
Tiling the genome into consistently named subsequences enables precision medicine and machine learning with millions of complex individual data-sets
S Guthrie, A Connelly, P Amstutz, AF Berrey, N Cesar, J Chen, ...
PeerJ PrePrints, 2015
52015
Portable, reproducible analysis with arvados
P Amstutz
F1000Research 4, 114, 2015
52015
Portable workflow and tool descriptions with the CWL
P Amstutz, N Tijanić, S Soiland-Reyes, J Kern, L Stojanovic, T Pierce, ...
Bioinformatics Open Source Conference, 2015
42015
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Articles 1–20